miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 3' -64.4 NC_006146.1 + 14219 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 42247 0.79 0.087199
Target:  5'- uGCCCG-UCCCC-GCCGUCCCCGAAUg -3'
miRNA:   3'- uCGGGCuGGGGGuCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 48403 0.78 0.096394
Target:  5'- cGGCCuccauucucuCGACCCCgCcGCCGUCCCCGAGCa -3'
miRNA:   3'- -UCGG----------GCUGGGG-GuCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 120882 0.66 0.564617
Target:  5'- cGCCuCGACCCcggcugcaucaaCCGGaUCGCCUCCGAc- -3'
miRNA:   3'- uCGG-GCUGGG------------GGUC-GGCGGGGGUUug -5'
28978 3' -64.4 NC_006146.1 + 26531 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 29609 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 16943 0.82 0.047367
Target:  5'- cGGCCCGGugugccagcgucCCCCCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGGGUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78591 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78711 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78889 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78771 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78681 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 17297 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78801 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 20375 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78621 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78859 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 130875 0.78 0.096394
Target:  5'- cGGCUaCGGCCCCCAGCagGCCCCCugcuACg -3'
miRNA:   3'- -UCGG-GCUGGGGGUCGg-CGGGGGuu--UG- -5'
28978 3' -64.4 NC_006146.1 + 23453 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 55495 0.83 0.043853
Target:  5'- aGGCCCGGCCgCCAGCUGCCUCCu-GCa -3'
miRNA:   3'- -UCGGGCUGGgGGUCGGCGGGGGuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.