miRNA display CGI


Results 21 - 40 of 467 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 3' -64.4 NC_006146.1 + 156102 0.77 0.119645
Target:  5'- cGGCCCGGccggccucuccuucCCCUCAGCCGCCaacaggugCCCGAGCc -3'
miRNA:   3'- -UCGGGCU--------------GGGGGUCGGCGG--------GGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 48403 0.78 0.096394
Target:  5'- cGGCCuccauucucuCGACCCCgCcGCCGUCCCCGAGCa -3'
miRNA:   3'- -UCGG----------GCUGGGG-GuCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78681 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 23453 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 16358 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 29254 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 42247 0.79 0.087199
Target:  5'- uGCCCG-UCCCC-GCCGUCCCCGAAUg -3'
miRNA:   3'- uCGGGCuGGGGGuCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 20375 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 26176 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 17297 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 130875 0.78 0.096394
Target:  5'- cGGCUaCGGCCCCCAGCagGCCCCCugcuACg -3'
miRNA:   3'- -UCGG-GCUGGGGGUCGg-CGGGGGuu--UG- -5'
28978 3' -64.4 NC_006146.1 + 13865 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78801 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78711 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 16943 0.82 0.047367
Target:  5'- cGGCCCGGugugccagcgucCCCCCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGGGUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 26531 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 28670 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 19436 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 95421 0.75 0.165407
Target:  5'- --gCCGGCCCCC-GCCGUCCCCGuGACc -3'
miRNA:   3'- ucgGGCUGGGGGuCGGCGGGGGU-UUG- -5'
28978 3' -64.4 NC_006146.1 + 147770 0.76 0.129761
Target:  5'- aAGCCCaGGCUCCCGGCCuCUCCCAGGa -3'
miRNA:   3'- -UCGGG-CUGGGGGUCGGcGGGGGUUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.