miRNA display CGI


Results 41 - 60 of 467 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 3' -64.4 NC_006146.1 + 13280 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 42247 0.79 0.087199
Target:  5'- uGCCCG-UCCCC-GCCGUCCCCGAAUg -3'
miRNA:   3'- uCGGGCuGGGGGuCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 20375 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 93064 0.74 0.16942
Target:  5'- aAGUCCcACCCCCccGCCGCCCCCc--- -3'
miRNA:   3'- -UCGGGcUGGGGGu-CGGCGGGGGuuug -5'
28978 3' -64.4 NC_006146.1 + 17297 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 94521 0.72 0.251975
Target:  5'- cGGUCCcuCCCCCGGCgCGCCCUCucguGGCg -3'
miRNA:   3'- -UCGGGcuGGGGGUCG-GCGGGGGu---UUG- -5'
28978 3' -64.4 NC_006146.1 + 26531 1.07 0.000721
Target:  5'- cAGCCCGACCCCCAGCCGCCCCCAAACc -3'
miRNA:   3'- -UCGGGCUGGGGGUCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 46958 0.72 0.246315
Target:  5'- uGCCCGcguauuucGCCggCCCGGCCGCCgCCAGGa -3'
miRNA:   3'- uCGGGC--------UGG--GGGUCGGCGGgGGUUUg -5'
28978 3' -64.4 NC_006146.1 + 139287 0.73 0.224724
Target:  5'- gGGCCCGGCCUUgAGCCcauCCCCCGu-- -3'
miRNA:   3'- -UCGGGCUGGGGgUCGGc--GGGGGUuug -5'
28978 3' -64.4 NC_006146.1 + 25493 0.73 0.204762
Target:  5'- uGCCCGGCCugCCCGGCCuCgCUCCGGGCg -3'
miRNA:   3'- uCGGGCUGG--GGGUCGGcG-GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 16259 0.73 0.204762
Target:  5'- uGCCCGGCCugCCCGGCCuCgCUCCGGGCg -3'
miRNA:   3'- uCGGGCUGG--GGGUCGGcG-GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 28670 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 19436 0.74 0.173519
Target:  5'- cGCCCcagaGCCCCUcgGGuCCGCCUCCAGGCg -3'
miRNA:   3'- uCGGGc---UGGGGG--UC-GGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 84301 0.75 0.165407
Target:  5'- aAGCCCaGCUgccccucaagCCCAGCUGCCCCuCAAGCc -3'
miRNA:   3'- -UCGGGcUGG----------GGGUCGGCGGGG-GUUUG- -5'
28978 3' -64.4 NC_006146.1 + 26176 0.77 0.123539
Target:  5'- cGGCCCGGugugccagcgucCCCCgCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGG-GUCGGCGGG-----------GGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 156102 0.77 0.119645
Target:  5'- cGGCCCGGccggccucuccuucCCCUCAGCCGCCaacaggugCCCGAGCc -3'
miRNA:   3'- -UCGGGCU--------------GGGGGUCGGCGG--------GGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 48403 0.78 0.096394
Target:  5'- cGGCCuccauucucuCGACCCCgCcGCCGUCCCCGAGCa -3'
miRNA:   3'- -UCGG----------GCUGGGG-GuCGGCGGGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78801 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 78711 0.81 0.062755
Target:  5'- gGGCCCGcCCCCCAGCaGCagCCCCAGGCc -3'
miRNA:   3'- -UCGGGCuGGGGGUCGgCG--GGGGUUUG- -5'
28978 3' -64.4 NC_006146.1 + 16943 0.82 0.047367
Target:  5'- cGGCCCGGugugccagcgucCCCCCAGCCGCCCagucucugccuCCAGGCa -3'
miRNA:   3'- -UCGGGCU------------GGGGGUCGGCGGG-----------GGUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.