miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 31051 0.66 0.900436
Target:  5'- cACGUCCcuGcGUUCUgGuGGAGGAGGu -3'
miRNA:   3'- -UGCAGGucCcCAGGAgCuCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 117729 0.66 0.900436
Target:  5'- uGCGgcCCAGGc--CC-CGAGGGAGAGGc -3'
miRNA:   3'- -UGCa-GGUCCccaGGaGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 127498 0.66 0.894129
Target:  5'- gGCGggaggCCGGgucGGGUCg--GGGGAAGAGGg -3'
miRNA:   3'- -UGCa----GGUC---CCCAGgagCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 28671 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 25593 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 22515 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 19437 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 16360 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 13282 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 170447 0.66 0.888269
Target:  5'- cGCGUgCCGGGGGaCC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 169516 0.66 0.888269
Target:  5'- cGCGUgCCGGGGGaCC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 168584 0.66 0.888269
Target:  5'- cGCGUgCCGGGGGaCC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 167652 0.66 0.888269
Target:  5'- cGCGUgCCGGGGG-CC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 27386 0.66 0.887608
Target:  5'- -aG-CCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 24309 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 21231 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 18153 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 15075 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 49878 0.66 0.887608
Target:  5'- cCGUCgGgaggcuGGGGUCCUCcGGuaGGAGAGGu -3'
miRNA:   3'- uGCAGgU------CCCCAGGAGcUC--CUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 29894 0.66 0.880874
Target:  5'- ---aCCAGGGGcUCCUgGGGGGAacuGGg -3'
miRNA:   3'- ugcaGGUCCCC-AGGAgCUCCUUcu-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.