miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 127498 0.66 0.894129
Target:  5'- gGCGggaggCCGGgucGGGUCg--GGGGAAGAGGg -3'
miRNA:   3'- -UGCa----GGUC---CCCAGgagCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 15075 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 18153 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 45062 0.67 0.819948
Target:  5'- ---cCUAGGGGcggcugaggugCCUCGuGGGGAGAGGg -3'
miRNA:   3'- ugcaGGUCCCCa----------GGAGC-UCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 2584 0.67 0.851906
Target:  5'- gACGUuuGGaGGG-CgUCGAauaGGGAGAGGg -3'
miRNA:   3'- -UGCAggUC-CCCaGgAGCU---CCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 133060 0.67 0.836276
Target:  5'- gGCGUCUccaGGGuGGUUC-CGGGuGggGGGGu -3'
miRNA:   3'- -UGCAGG---UCC-CCAGGaGCUC-CuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 146956 0.67 0.856451
Target:  5'- ---cCCGGGGGgaaagucgcccgcCCUUGGGGcAGGAGGg -3'
miRNA:   3'- ugcaGGUCCCCa------------GGAGCUCC-UUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 47673 0.67 0.851906
Target:  5'- gGCGgCCAGGG--UCUCGuGGAuGGAGGa -3'
miRNA:   3'- -UGCaGGUCCCcaGGAGCuCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 32451 0.67 0.859443
Target:  5'- -gGUCUGGGGGUUCUau-GGuGGGAGGa -3'
miRNA:   3'- ugCAGGUCCCCAGGAgcuCC-UUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 47767 0.67 0.819948
Target:  5'- gACGUCugcggggccguCAGGGGUCUcgcCGAGGGAGcucuGGc -3'
miRNA:   3'- -UGCAG-----------GUCCCCAGGa--GCUCCUUCu---CC- -5'
28978 5' -57.7 NC_006146.1 + 126991 0.67 0.859443
Target:  5'- aACcUCCAGGccccGGcugCCcggCGAGGAGGGGGg -3'
miRNA:   3'- -UGcAGGUCC----CCa--GGa--GCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 29524 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 20291 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170164 0.68 0.776453
Target:  5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3'
miRNA:   3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 168301 0.68 0.776453
Target:  5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3'
miRNA:   3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 14135 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 167369 0.68 0.776453
Target:  5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3'
miRNA:   3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 5715 0.68 0.766441
Target:  5'- gGCG-CCAGGGGUCagugCGAugacuauGGAAGuGGc -3'
miRNA:   3'- -UGCaGGUCCCCAGga--GCU-------CCUUCuCC- -5'
28978 5' -57.7 NC_006146.1 + 23369 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 26446 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.