miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 20410 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 14254 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 17332 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 29644 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 23488 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 26566 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 56231 0.81 0.197949
Target:  5'- cCGUCCAGcGGGUCCgCGGGGGcGGAGGc -3'
miRNA:   3'- uGCAGGUC-CCCAGGaGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 106995 0.8 0.228444
Target:  5'- ---aCCuGGGGUCCUCGAGGAuggcacggguGGAGGa -3'
miRNA:   3'- ugcaGGuCCCCAGGAGCUCCU----------UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 130050 0.77 0.30128
Target:  5'- cCGUCCgcggcggcccuGGGGG-CCUCGGGGuGGAGGg -3'
miRNA:   3'- uGCAGG-----------UCCCCaGGAGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 129988 0.74 0.458448
Target:  5'- gGCGUgCAGGGccuccacuuuaggGUCC-CGGGGGAGGGGc -3'
miRNA:   3'- -UGCAgGUCCC-------------CAGGaGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 49522 0.74 0.459345
Target:  5'- gGCGggugaUCCGGGGGcUCCUCuGGGGGcGGAGGc -3'
miRNA:   3'- -UGC-----AGGUCCCC-AGGAG-CUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170396 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170212 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 169281 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 167601 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 169465 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 167417 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 168349 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 168533 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 68719 0.72 0.582451
Target:  5'- -gGUCUccGGGUCCUCGGGGAgcuGGuGGu -3'
miRNA:   3'- ugCAGGucCCCAGGAGCUCCU---UCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.