miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 69613 0.71 0.612092
Target:  5'- gACGUCCAGGcccacGUCCcCGGGGuacuGGGGGc -3'
miRNA:   3'- -UGCAGGUCCc----CAGGaGCUCCu---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 54791 0.71 0.621017
Target:  5'- gGCGcCCccGcGGUCCUCuccccaaGAGGAGGAGGg -3'
miRNA:   3'- -UGCaGGucC-CCAGGAG-------CUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 34077 0.71 0.62201
Target:  5'- cACGgggCCGGGGGUCC-CGGGGGGcAGc -3'
miRNA:   3'- -UGCa--GGUCCCCAGGaGCUCCUUcUCc -5'
28978 5' -57.7 NC_006146.1 + 9585 0.71 0.631934
Target:  5'- -gGUCacaccccaAGGGGUCCUCGGGGGcAGAu- -3'
miRNA:   3'- ugCAGg-------UCCCCAGGAGCUCCU-UCUcc -5'
28978 5' -57.7 NC_006146.1 + 151392 0.71 0.651777
Target:  5'- uGCGUCCucuGGUCCacgGGGGAGGAGGc -3'
miRNA:   3'- -UGCAGGuccCCAGGag-CUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 92272 0.71 0.651777
Target:  5'- cGCGUCCAGGcagCCgugucCGGGGGAGAGa -3'
miRNA:   3'- -UGCAGGUCCccaGGa----GCUCCUUCUCc -5'
28978 5' -57.7 NC_006146.1 + 15217 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 18295 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 21373 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 24451 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 27529 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 63549 0.7 0.670574
Target:  5'- gUGcCCAGGGGUCCcagggcuUCGuGGAAGAa- -3'
miRNA:   3'- uGCaGGUCCCCAGG-------AGCuCCUUCUcc -5'
28978 5' -57.7 NC_006146.1 + 126346 0.7 0.67156
Target:  5'- gGC-UCCAaucGGGcUCUCGGGGGAGAGGg -3'
miRNA:   3'- -UGcAGGUc--CCCaGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 67348 0.7 0.685341
Target:  5'- gGCGagcccaUCCucGGGGUCCgggucccacgaguaCGGGGAGGGGGg -3'
miRNA:   3'- -UGC------AGGu-CCCCAGGa-------------GCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 65745 0.7 0.700989
Target:  5'- gAC-UCCAcggacGGGGagaucucuUCCUCuGAGGAGGAGGa -3'
miRNA:   3'- -UGcAGGU-----CCCC--------AGGAG-CUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 104370 0.69 0.739425
Target:  5'- cACGUCCAGGaucuuguugcGGUCgUgGAGGGAGGc- -3'
miRNA:   3'- -UGCAGGUCC----------CCAGgAgCUCCUUCUcc -5'
28978 5' -57.7 NC_006146.1 + 31607 0.69 0.739425
Target:  5'- cACGgcacCCGGGGGggugCCUgGuguuuaguAGGAGGAGGu -3'
miRNA:   3'- -UGCa---GGUCCCCa---GGAgC--------UCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 137983 0.69 0.758148
Target:  5'- ---cCCGGGGGcCCggCGGGGuGGGGGg -3'
miRNA:   3'- ugcaGGUCCCCaGGa-GCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 48578 0.69 0.758148
Target:  5'- --aUCC-GGGG-CCUCGGGGGucagGGAGGc -3'
miRNA:   3'- ugcAGGuCCCCaGGAGCUCCU----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 5715 0.68 0.766441
Target:  5'- gGCG-CCAGGGGUCagugCGAugacuauGGAAGuGGc -3'
miRNA:   3'- -UGCaGGUCCCCAGga--GCU-------CCUUCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.