miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 2584 0.67 0.851906
Target:  5'- gACGUuuGGaGGG-CgUCGAauaGGGAGAGGg -3'
miRNA:   3'- -UGCAggUC-CCCaGgAGCU---CCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 5715 0.68 0.766441
Target:  5'- gGCG-CCAGGGGUCagugCGAugacuauGGAAGuGGc -3'
miRNA:   3'- -UGCaGGUCCCCAGga--GCU-------CCUUCuCC- -5'
28978 5' -57.7 NC_006146.1 + 9585 0.71 0.631934
Target:  5'- -gGUCacaccccaAGGGGUCCUCGGGGGcAGAu- -3'
miRNA:   3'- ugCAGg-------UCCCCAGGAGCUCCU-UCUcc -5'
28978 5' -57.7 NC_006146.1 + 11000 0.68 0.802978
Target:  5'- cCGgugaCGGGGGUCUUCuuuGAcGGAGGGGGu -3'
miRNA:   3'- uGCag--GUCCCCAGGAG---CU-CCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 13282 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 14135 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 14254 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 15075 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 15217 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 16360 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 17213 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 17332 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 18153 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 18295 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 19437 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 20291 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 20410 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 21231 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 21373 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 22515 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.