miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 23369 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 23488 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 24309 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 24451 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 25593 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 26446 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 26566 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 27386 0.66 0.887608
Target:  5'- -aG-CCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 27529 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 28671 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 29524 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 29644 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 29894 0.66 0.880874
Target:  5'- ---aCCAGGGGcUCCUgGGGGGAacuGGg -3'
miRNA:   3'- ugcaGGUCCCC-AGGAgCUCCUUcu-CC- -5'
28978 5' -57.7 NC_006146.1 + 31051 0.66 0.900436
Target:  5'- cACGUCCcuGcGUUCUgGuGGAGGAGGu -3'
miRNA:   3'- -UGCAGGucCcCAGGAgCuCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 31607 0.69 0.739425
Target:  5'- cACGgcacCCGGGGGggugCCUgGuguuuaguAGGAGGAGGu -3'
miRNA:   3'- -UGCa---GGUCCCCa---GGAgC--------UCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 32451 0.67 0.859443
Target:  5'- -gGUCUGGGGGUUCUau-GGuGGGAGGa -3'
miRNA:   3'- ugCAGGUCCCCAGGAgcuCC-UUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 34077 0.71 0.62201
Target:  5'- cACGgggCCGGGGGUCC-CGGGGGGcAGc -3'
miRNA:   3'- -UGCa--GGUCCCCAGGaGCUCCUUcUCc -5'
28978 5' -57.7 NC_006146.1 + 41852 0.66 0.866787
Target:  5'- cCGUggCCAGGGGcuaccggggCCUCGu-GAAGAGGu -3'
miRNA:   3'- uGCA--GGUCCCCa--------GGAGCucCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 45062 0.67 0.819948
Target:  5'- ---cCUAGGGGcggcugaggugCCUCGuGGGGAGAGGg -3'
miRNA:   3'- ugcaGGUCCCCa----------GGAGC-UCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 47673 0.67 0.851906
Target:  5'- gGCGgCCAGGG--UCUCGuGGAuGGAGGa -3'
miRNA:   3'- -UGCaGGUCCCcaGGAGCuCCU-UCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.