Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28978 | 5' | -57.7 | NC_006146.1 | + | 47767 | 0.67 | 0.819948 |
Target: 5'- gACGUCugcggggccguCAGGGGUCUcgcCGAGGGAGcucuGGc -3' miRNA: 3'- -UGCAG-----------GUCCCCAGGa--GCUCCUUCu---CC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 48578 | 0.69 | 0.758148 |
Target: 5'- --aUCC-GGGG-CCUCGGGGGucagGGAGGc -3' miRNA: 3'- ugcAGGuCCCCaGGAGCUCCU----UCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 49522 | 0.74 | 0.459345 |
Target: 5'- gGCGggugaUCCGGGGGcUCCUCuGGGGGcGGAGGc -3' miRNA: 3'- -UGC-----AGGUCCCC-AGGAG-CUCCU-UCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 49878 | 0.66 | 0.887608 |
Target: 5'- cCGUCgGgaggcuGGGGUCCUCcGGuaGGAGAGGu -3' miRNA: 3'- uGCAGgU------CCCCAGGAGcUC--CUUCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 54791 | 0.71 | 0.621017 |
Target: 5'- gGCGcCCccGcGGUCCUCuccccaaGAGGAGGAGGg -3' miRNA: 3'- -UGCaGGucC-CCAGGAG-------CUCCUUCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 56231 | 0.81 | 0.197949 |
Target: 5'- cCGUCCAGcGGGUCCgCGGGGGcGGAGGc -3' miRNA: 3'- uGCAGGUC-CCCAGGaGCUCCU-UCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 63549 | 0.7 | 0.670574 |
Target: 5'- gUGcCCAGGGGUCCcagggcuUCGuGGAAGAa- -3' miRNA: 3'- uGCaGGUCCCCAGG-------AGCuCCUUCUcc -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 65745 | 0.7 | 0.700989 |
Target: 5'- gAC-UCCAcggacGGGGagaucucuUCCUCuGAGGAGGAGGa -3' miRNA: 3'- -UGcAGGU-----CCCC--------AGGAG-CUCCUUCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 67348 | 0.7 | 0.685341 |
Target: 5'- gGCGagcccaUCCucGGGGUCCgggucccacgaguaCGGGGAGGGGGg -3' miRNA: 3'- -UGC------AGGu-CCCCAGGa-------------GCUCCUUCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 68719 | 0.72 | 0.582451 |
Target: 5'- -gGUCUccGGGUCCUCGGGGAgcuGGuGGu -3' miRNA: 3'- ugCAGGucCCCAGGAGCUCCU---UCuCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 69613 | 0.71 | 0.612092 |
Target: 5'- gACGUCCAGGcccacGUCCcCGGGGuacuGGGGGc -3' miRNA: 3'- -UGCAGGUCCc----CAGGaGCUCCu---UCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 90196 | 0.66 | 0.866787 |
Target: 5'- -aGUgCAGGGGgCagagGGGGAAGAGGa -3' miRNA: 3'- ugCAgGUCCCCaGgag-CUCCUUCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 92272 | 0.71 | 0.651777 |
Target: 5'- cGCGUCCAGGcagCCgugucCGGGGGAGAGa -3' miRNA: 3'- -UGCAGGUCCccaGGa----GCUCCUUCUCc -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 104370 | 0.69 | 0.739425 |
Target: 5'- cACGUCCAGGaucuuguugcGGUCgUgGAGGGAGGc- -3' miRNA: 3'- -UGCAGGUCC----------CCAGgAgCUCCUUCUcc -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 106995 | 0.8 | 0.228444 |
Target: 5'- ---aCCuGGGGUCCUCGAGGAuggcacggguGGAGGa -3' miRNA: 3'- ugcaGGuCCCCAGGAGCUCCU----------UCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 117729 | 0.66 | 0.900436 |
Target: 5'- uGCGgcCCAGGc--CC-CGAGGGAGAGGc -3' miRNA: 3'- -UGCa-GGUCCccaGGaGCUCCUUCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 126346 | 0.7 | 0.67156 |
Target: 5'- gGC-UCCAaucGGGcUCUCGGGGGAGAGGg -3' miRNA: 3'- -UGcAGGUc--CCCaGGAGCUCCUUCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 126991 | 0.67 | 0.859443 |
Target: 5'- aACcUCCAGGccccGGcugCCcggCGAGGAGGGGGg -3' miRNA: 3'- -UGcAGGUCC----CCa--GGa--GCUCCUUCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 127498 | 0.66 | 0.894129 |
Target: 5'- gGCGggaggCCGGgucGGGUCg--GGGGAAGAGGg -3' miRNA: 3'- -UGCa----GGUC---CCCAGgagCUCCUUCUCC- -5' |
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28978 | 5' | -57.7 | NC_006146.1 | + | 129988 | 0.74 | 0.458448 |
Target: 5'- gGCGUgCAGGGccuccacuuuaggGUCC-CGGGGGAGGGGc -3' miRNA: 3'- -UGCAgGUCCC-------------CAGGaGCUCCUUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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