miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 170671 0.68 0.793393
Target:  5'- cGCGggggaggCCAGGGGcgCCcCGGGGAccgucgcGGGGGc -3'
miRNA:   3'- -UGCa------GGUCCCCa-GGaGCUCCU-------UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170447 0.66 0.888269
Target:  5'- cGCGUgCCGGGGGaCC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 170396 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170212 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170164 0.68 0.776453
Target:  5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3'
miRNA:   3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 169516 0.66 0.888269
Target:  5'- cGCGUgCCGGGGGaCC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 169465 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 169281 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 169233 0.68 0.776453
Target:  5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3'
miRNA:   3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 168584 0.66 0.888269
Target:  5'- cGCGUgCCGGGGGaCC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 168533 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 168349 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 168301 0.68 0.776453
Target:  5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3'
miRNA:   3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 167652 0.66 0.888269
Target:  5'- cGCGUgCCGGGGG-CC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 167601 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 167417 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 167369 0.68 0.776453
Target:  5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3'
miRNA:   3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 151392 0.71 0.651777
Target:  5'- uGCGUCCucuGGUCCacgGGGGAGGAGGc -3'
miRNA:   3'- -UGCAGGuccCCAGGag-CUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 146956 0.67 0.856451
Target:  5'- ---cCCGGGGGgaaagucgcccgcCCUUGGGGcAGGAGGg -3'
miRNA:   3'- ugcaGGUCCCCa------------GGAGCUCC-UUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 137983 0.69 0.758148
Target:  5'- ---cCCGGGGGcCCggCGGGGuGGGGGg -3'
miRNA:   3'- ugcaGGUCCCCaGGa-GCUCCuUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.