miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 133060 0.67 0.836276
Target:  5'- gGCGUCUccaGGGuGGUUC-CGGGuGggGGGGu -3'
miRNA:   3'- -UGCAGG---UCC-CCAGGaGCUC-CuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 132967 0.66 0.880874
Target:  5'- --aUCUcuGGGUCCUCGGGGGgcGGuGGa -3'
miRNA:   3'- ugcAGGucCCCAGGAGCUCCU--UCuCC- -5'
28978 5' -57.7 NC_006146.1 + 130050 0.77 0.30128
Target:  5'- cCGUCCgcggcggcccuGGGGG-CCUCGGGGuGGAGGg -3'
miRNA:   3'- uGCAGG-----------UCCCCaGGAGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 129988 0.74 0.458448
Target:  5'- gGCGUgCAGGGccuccacuuuaggGUCC-CGGGGGAGGGGc -3'
miRNA:   3'- -UGCAgGUCCC-------------CAGGaGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 127498 0.66 0.894129
Target:  5'- gGCGggaggCCGGgucGGGUCg--GGGGAAGAGGg -3'
miRNA:   3'- -UGCa----GGUC---CCCAGgagCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 126991 0.67 0.859443
Target:  5'- aACcUCCAGGccccGGcugCCcggCGAGGAGGGGGg -3'
miRNA:   3'- -UGcAGGUCC----CCa--GGa--GCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 126346 0.7 0.67156
Target:  5'- gGC-UCCAaucGGGcUCUCGGGGGAGAGGg -3'
miRNA:   3'- -UGcAGGUc--CCCaGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 117729 0.66 0.900436
Target:  5'- uGCGgcCCAGGc--CC-CGAGGGAGAGGc -3'
miRNA:   3'- -UGCa-GGUCCccaGGaGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 106995 0.8 0.228444
Target:  5'- ---aCCuGGGGUCCUCGAGGAuggcacggguGGAGGa -3'
miRNA:   3'- ugcaGGuCCCCAGGAGCUCCU----------UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 104370 0.69 0.739425
Target:  5'- cACGUCCAGGaucuuguugcGGUCgUgGAGGGAGGc- -3'
miRNA:   3'- -UGCAGGUCC----------CCAGgAgCUCCUUCUcc -5'
28978 5' -57.7 NC_006146.1 + 92272 0.71 0.651777
Target:  5'- cGCGUCCAGGcagCCgugucCGGGGGAGAGa -3'
miRNA:   3'- -UGCAGGUCCccaGGa----GCUCCUUCUCc -5'
28978 5' -57.7 NC_006146.1 + 90196 0.66 0.866787
Target:  5'- -aGUgCAGGGGgCagagGGGGAAGAGGa -3'
miRNA:   3'- ugCAgGUCCCCaGgag-CUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 69613 0.71 0.612092
Target:  5'- gACGUCCAGGcccacGUCCcCGGGGuacuGGGGGc -3'
miRNA:   3'- -UGCAGGUCCc----CAGGaGCUCCu---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 68719 0.72 0.582451
Target:  5'- -gGUCUccGGGUCCUCGGGGAgcuGGuGGu -3'
miRNA:   3'- ugCAGGucCCCAGGAGCUCCU---UCuCC- -5'
28978 5' -57.7 NC_006146.1 + 67348 0.7 0.685341
Target:  5'- gGCGagcccaUCCucGGGGUCCgggucccacgaguaCGGGGAGGGGGg -3'
miRNA:   3'- -UGC------AGGu-CCCCAGGa-------------GCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 65745 0.7 0.700989
Target:  5'- gAC-UCCAcggacGGGGagaucucuUCCUCuGAGGAGGAGGa -3'
miRNA:   3'- -UGcAGGU-----CCCC--------AGGAG-CUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 63549 0.7 0.670574
Target:  5'- gUGcCCAGGGGUCCcagggcuUCGuGGAAGAa- -3'
miRNA:   3'- uGCaGGUCCCCAGG-------AGCuCCUUCUcc -5'
28978 5' -57.7 NC_006146.1 + 56231 0.81 0.197949
Target:  5'- cCGUCCAGcGGGUCCgCGGGGGcGGAGGc -3'
miRNA:   3'- uGCAGGUC-CCCAGGaGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 54791 0.71 0.621017
Target:  5'- gGCGcCCccGcGGUCCUCuccccaaGAGGAGGAGGg -3'
miRNA:   3'- -UGCaGGucC-CCAGGAG-------CUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 49878 0.66 0.887608
Target:  5'- cCGUCgGgaggcuGGGGUCCUCcGGuaGGAGAGGu -3'
miRNA:   3'- uGCAGgU------CCCCAGGAGcUC--CUUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.