miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 27529 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 24451 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 169465 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 49522 0.74 0.459345
Target:  5'- gGCGggugaUCCGGGGGcUCCUCuGGGGGcGGAGGc -3'
miRNA:   3'- -UGC-----AGGUCCCC-AGGAG-CUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 133060 0.67 0.836276
Target:  5'- gGCGUCUccaGGGuGGUUC-CGGGuGggGGGGu -3'
miRNA:   3'- -UGCAGG---UCC-CCAGGaGCUC-CuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 167369 0.68 0.776453
Target:  5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3'
miRNA:   3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5'
28978 5' -57.7 NC_006146.1 + 18295 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 56231 0.81 0.197949
Target:  5'- cCGUCCAGcGGGUCCgCGGGGGcGGAGGc -3'
miRNA:   3'- uGCAGGUC-CCCAGGaGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 48578 0.69 0.758148
Target:  5'- --aUCC-GGGG-CCUCGGGGGucagGGAGGc -3'
miRNA:   3'- ugcAGGuCCCCaGGAGCUCCU----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 29644 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 21373 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 67348 0.7 0.685341
Target:  5'- gGCGagcccaUCCucGGGGUCCgggucccacgaguaCGGGGAGGGGGg -3'
miRNA:   3'- -UGC------AGGu-CCCCAGGa-------------GCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 15217 0.71 0.651777
Target:  5'- cGCGUCCgcaGGaGGGucuUCCUUGAaGAAGAGGa -3'
miRNA:   3'- -UGCAGG---UC-CCC---AGGAGCUcCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170396 0.73 0.514727
Target:  5'- gGCcUCCccuGGGGG-CCUCGGGGGcGGAGGg -3'
miRNA:   3'- -UGcAGG---UCCCCaGGAGCUCCU-UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170212 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 167417 0.73 0.514727
Target:  5'- gGCGggggCCAgcgcGGGGUCC-CGGGGcGGGGGg -3'
miRNA:   3'- -UGCa---GGU----CCCCAGGaGCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 90196 0.66 0.866787
Target:  5'- -aGUgCAGGGGgCagagGGGGAAGAGGa -3'
miRNA:   3'- ugCAgGUCCCCaGgag-CUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 2584 0.67 0.851906
Target:  5'- gACGUuuGGaGGG-CgUCGAauaGGGAGAGGg -3'
miRNA:   3'- -UGCAggUC-CCCaGgAGCU---CCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170671 0.68 0.793393
Target:  5'- cGCGggggaggCCAGGGGcgCCcCGGGGAccgucgcGGGGGc -3'
miRNA:   3'- -UGCa------GGUCCCCa-GGaGCUCCU-------UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 168301 0.68 0.776453
Target:  5'- gGCGccggCCGGGGGcugagggggcUCC-CGAGGgcGGGGc -3'
miRNA:   3'- -UGCa---GGUCCCC----------AGGaGCUCCuuCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.