miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28978 5' -57.7 NC_006146.1 + 137983 0.69 0.758148
Target:  5'- ---cCCGGGGGcCCggCGGGGuGGGGGg -3'
miRNA:   3'- ugcaGGUCCCCaGGa-GCUCCuUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 48578 0.69 0.758148
Target:  5'- --aUCC-GGGG-CCUCGGGGGucagGGAGGc -3'
miRNA:   3'- ugcAGGuCCCCaGGAGCUCCU----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 41852 0.66 0.866787
Target:  5'- cCGUggCCAGGGGcuaccggggCCUCGu-GAAGAGGu -3'
miRNA:   3'- uGCA--GGUCCCCa--------GGAGCucCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 14254 1.09 0.00271
Target:  5'- cACGUCCAGGGGUCCUCGAGGAAGAGGc -3'
miRNA:   3'- -UGCAGGUCCCCAGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 170447 0.66 0.888269
Target:  5'- cGCGUgCCGGGGGaCC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 168584 0.66 0.888269
Target:  5'- cGCGUgCCGGGGGaCC-CGGGGGcgugucccgcgacccGAGGg -3'
miRNA:   3'- -UGCA-GGUCCCCaGGaGCUCCUu--------------CUCC- -5'
28978 5' -57.7 NC_006146.1 + 22515 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 92272 0.71 0.651777
Target:  5'- cGCGUCCAGGcagCCgugucCGGGGGAGAGa -3'
miRNA:   3'- -UGCAGGUCCccaGGa----GCUCCUUCUCc -5'
28978 5' -57.7 NC_006146.1 + 13282 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 25593 0.66 0.894129
Target:  5'- gGCGacCCuGGGGUCUgucUGGGGGAcuGAGGg -3'
miRNA:   3'- -UGCa-GGuCCCCAGGa--GCUCCUU--CUCC- -5'
28978 5' -57.7 NC_006146.1 + 21231 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 63549 0.7 0.670574
Target:  5'- gUGcCCAGGGGUCCcagggcuUCGuGGAAGAa- -3'
miRNA:   3'- uGCaGGUCCCCAGG-------AGCuCCUUCUcc -5'
28978 5' -57.7 NC_006146.1 + 126346 0.7 0.67156
Target:  5'- gGC-UCCAaucGGGcUCUCGGGGGAGAGGg -3'
miRNA:   3'- -UGcAGGUc--CCCaGGAGCUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 65745 0.7 0.700989
Target:  5'- gAC-UCCAcggacGGGGagaucucuUCCUCuGAGGAGGAGGa -3'
miRNA:   3'- -UGcAGGU-----CCCC--------AGGAG-CUCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 31607 0.69 0.739425
Target:  5'- cACGgcacCCGGGGGggugCCUgGuguuuaguAGGAGGAGGu -3'
miRNA:   3'- -UGCa---GGUCCCCa---GGAgC--------UCCUUCUCC- -5'
28978 5' -57.7 NC_006146.1 + 5715 0.68 0.766441
Target:  5'- gGCG-CCAGGGGUCagugCGAugacuauGGAAGuGGc -3'
miRNA:   3'- -UGCaGGUCCCCAGga--GCU-------CCUUCuCC- -5'
28978 5' -57.7 NC_006146.1 + 29524 0.68 0.776453
Target:  5'- -aGgagCC-GGGG-CCUCGGGGAgggagAGAGGa -3'
miRNA:   3'- ugCa--GGuCCCCaGGAGCUCCU-----UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 29894 0.66 0.880874
Target:  5'- ---aCCAGGGGcUCCUgGGGGGAacuGGg -3'
miRNA:   3'- ugcaGGUCCCC-AGGAgCUCCUUcu-CC- -5'
28978 5' -57.7 NC_006146.1 + 27386 0.66 0.887608
Target:  5'- -aG-CCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5'
28978 5' -57.7 NC_006146.1 + 24309 0.66 0.887608
Target:  5'- -aGgCCuGGGG-CCUCGgAGGGccuGGAGGg -3'
miRNA:   3'- ugCaGGuCCCCaGGAGC-UCCU---UCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.