Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28979 | 3' | -54.6 | NC_006146.1 | + | 169420 | 0.69 | 0.812264 |
Target: 5'- gAG-GCCacguguGGAGGCCCGCGGAGAggccgUGUGu -3' miRNA: 3'- -UCgCGG------UCUUCGGGUGUCUCU-----ACAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 167556 | 0.69 | 0.812264 |
Target: 5'- gAG-GCCacguguGGAGGCCCGCGGAGAggccgUGUGu -3' miRNA: 3'- -UCgCGG------UCUUCGGGUGUCUCU-----ACAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 110365 | 0.69 | 0.803216 |
Target: 5'- cGGCGCU-GAGGCCCuggACAGAGAUc--- -3' miRNA: 3'- -UCGCGGuCUUCGGG---UGUCUCUAcauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 65201 | 0.69 | 0.803216 |
Target: 5'- aGGCGCUcugggggcccuGGGAGCCCGggcgucCAGAGGUGa-- -3' miRNA: 3'- -UCGCGG-----------UCUUCGGGU------GUCUCUACauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 127205 | 0.69 | 0.794004 |
Target: 5'- uGCGCaggcuGGGAGCCCACAGAGc----- -3' miRNA: 3'- uCGCGg----UCUUCGGGUGUCUCuacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 56769 | 0.7 | 0.765486 |
Target: 5'- cGGCGcCCGGccGCCCcugACGGAGGUGg-- -3' miRNA: 3'- -UCGC-GGUCuuCGGG---UGUCUCUACauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 58342 | 0.7 | 0.745833 |
Target: 5'- aGGCG-CAGAAGCCgGcCAGGGcAUGUAAa -3' miRNA: 3'- -UCGCgGUCUUCGGgU-GUCUC-UACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 152135 | 0.71 | 0.715593 |
Target: 5'- uGCGCCAGcGGCCCcUAGAGAg---- -3' miRNA: 3'- uCGCGGUCuUCGGGuGUCUCUacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 44370 | 0.71 | 0.715593 |
Target: 5'- aGGUGCCAGAcccccGCCCGgGGGGcGUGUGGg -3' miRNA: 3'- -UCGCGGUCUu----CGGGUgUCUC-UACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 156292 | 0.71 | 0.715593 |
Target: 5'- cAGCGCCAGcAGggCACAGAGGUGa-- -3' miRNA: 3'- -UCGCGGUCuUCggGUGUCUCUACauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 68223 | 0.71 | 0.70535 |
Target: 5'- gAGCGCCaAGAAGCagCCGCAGGGGg---- -3' miRNA: 3'- -UCGCGG-UCUUCG--GGUGUCUCUacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 31014 | 0.71 | 0.684677 |
Target: 5'- uAGCGaCCcuAGGUCCACAGAGAcGUAAu -3' miRNA: 3'- -UCGC-GGucUUCGGGUGUCUCUaCAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 167654 | 0.72 | 0.62186 |
Target: 5'- cGUGCCGGggGCCCGgGGGcGUGUc- -3' miRNA: 3'- uCGCGGUCuuCGGGUgUCUcUACAuu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 31438 | 0.73 | 0.611368 |
Target: 5'- gAG-GCCugcauGGAGCCCACGGAGAcUGUGu -3' miRNA: 3'- -UCgCGGu----CUUCGGGUGUCUCU-ACAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 4573 | 0.73 | 0.611368 |
Target: 5'- uGGCGUCggccugGGGAGCCCGCGGGGccGUGg -3' miRNA: 3'- -UCGCGG------UCUUCGGGUGUCUCuaCAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 159976 | 0.75 | 0.459867 |
Target: 5'- uGGCGCgCAGGAGCCCGCAGuuGggGUc- -3' miRNA: 3'- -UCGCG-GUCUUCGGGUGUCu-CuaCAuu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 14824 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 20979 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 17902 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 27135 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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