Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28979 | 3' | -54.6 | NC_006146.1 | + | 4573 | 0.73 | 0.611368 |
Target: 5'- uGGCGUCggccugGGGAGCCCGCGGGGccGUGg -3' miRNA: 3'- -UCGCGG------UCUUCGGGUGUCUCuaCAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 8509 | 0.66 | 0.922647 |
Target: 5'- gAGgGUCGGggGCCCuaacagcACAGAGAg---- -3' miRNA: 3'- -UCgCGGUCuuCGGG-------UGUCUCUacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 14824 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 17902 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 20979 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 24057 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 27135 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 31014 | 0.71 | 0.684677 |
Target: 5'- uAGCGaCCcuAGGUCCACAGAGAcGUAAu -3' miRNA: 3'- -UCGC-GGucUUCGGGUGUCUCUaCAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 31438 | 0.73 | 0.611368 |
Target: 5'- gAG-GCCugcauGGAGCCCACGGAGAcUGUGu -3' miRNA: 3'- -UCgCGGu----CUUCGGGUGUCUCU-ACAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 42222 | 0.66 | 0.938957 |
Target: 5'- cGGCGUgAGcccGGGCCCAgAGGGA-GUAGc -3' miRNA: 3'- -UCGCGgUC---UUCGGGUgUCUCUaCAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 44370 | 0.71 | 0.715593 |
Target: 5'- aGGUGCCAGAcccccGCCCGgGGGGcGUGUGGg -3' miRNA: 3'- -UCGCGGUCUu----CGGGUgUCUC-UACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 49258 | 0.67 | 0.898708 |
Target: 5'- cAGgGCCGGuAGCCCccugUAGAGGUGg-- -3' miRNA: 3'- -UCgCGGUCuUCGGGu---GUCUCUACauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 54206 | 0.66 | 0.938957 |
Target: 5'- aGGCGCCAccuGGugccGGCCCugAGGGAa---- -3' miRNA: 3'- -UCGCGGU---CU----UCGGGugUCUCUacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 54997 | 0.67 | 0.877767 |
Target: 5'- gGGUgGCCGGAAGCCCcccggGCGG-GAUGg-- -3' miRNA: 3'- -UCG-CGGUCUUCGGG-----UGUCuCUACauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 56769 | 0.7 | 0.765486 |
Target: 5'- cGGCGcCCGGccGCCCcugACGGAGGUGg-- -3' miRNA: 3'- -UCGC-GGUCuuCGGG---UGUCUCUACauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 58342 | 0.7 | 0.745833 |
Target: 5'- aGGCG-CAGAAGCCgGcCAGGGcAUGUAAa -3' miRNA: 3'- -UCGCgGUCUUCGGgU-GUCUC-UACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 61695 | 0.66 | 0.928711 |
Target: 5'- gGGCGgCAGggGCCUccuCGGAGcccugGUGAu -3' miRNA: 3'- -UCGCgGUCuuCGGGu--GUCUCua---CAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 65201 | 0.69 | 0.803216 |
Target: 5'- aGGCGCUcugggggcccuGGGAGCCCGggcgucCAGAGGUGa-- -3' miRNA: 3'- -UCGCGG-----------UCUUCGGGU------GUCUCUACauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 68223 | 0.71 | 0.70535 |
Target: 5'- gAGCGCCaAGAAGCagCCGCAGGGGg---- -3' miRNA: 3'- -UCGCGG-UCUUCG--GGUGUCUCUacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 69172 | 0.68 | 0.870319 |
Target: 5'- uGCGCCGGuGG-CCGCGGGGGcgGUGAc -3' miRNA: 3'- uCGCGGUCuUCgGGUGUCUCUa-CAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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