miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28979 3' -54.6 NC_006146.1 + 24057 1.06 0.004798
Target:  5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3'
miRNA:   3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5'
28979 3' -54.6 NC_006146.1 + 127072 0.68 0.868802
Target:  5'- cGGCGCgGGAAGCCgaaagggccaggGCGGAGcgGUGGg -3'
miRNA:   3'- -UCGCGgUCUUCGGg-----------UGUCUCuaCAUU- -5'
28979 3' -54.6 NC_006146.1 + 49258 0.67 0.898708
Target:  5'- cAGgGCCGGuAGCCCccugUAGAGGUGg-- -3'
miRNA:   3'- -UCgCGGUCuUCGGGu---GUCUCUACauu -5'
28979 3' -54.6 NC_006146.1 + 74722 0.66 0.923211
Target:  5'- cAGgGCCAGAaaGGCCCugGaGGGAcccaGUGAg -3'
miRNA:   3'- -UCgCGGUCU--UCGGGugU-CUCUa---CAUU- -5'
28979 3' -54.6 NC_006146.1 + 31014 0.71 0.684677
Target:  5'- uAGCGaCCcuAGGUCCACAGAGAcGUAAu -3'
miRNA:   3'- -UCGC-GGucUUCGGGUGUCUCUaCAUU- -5'
28979 3' -54.6 NC_006146.1 + 44370 0.71 0.715593
Target:  5'- aGGUGCCAGAcccccGCCCGgGGGGcGUGUGGg -3'
miRNA:   3'- -UCGCGGUCUu----CGGGUgUCUC-UACAUU- -5'
28979 3' -54.6 NC_006146.1 + 65201 0.69 0.803216
Target:  5'- aGGCGCUcugggggcccuGGGAGCCCGggcgucCAGAGGUGa-- -3'
miRNA:   3'- -UCGCGG-----------UCUUCGGGU------GUCUCUACauu -5'
28979 3' -54.6 NC_006146.1 + 14824 1.06 0.004798
Target:  5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3'
miRNA:   3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5'
28979 3' -54.6 NC_006146.1 + 17902 1.06 0.004798
Target:  5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3'
miRNA:   3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5'
28979 3' -54.6 NC_006146.1 + 126084 0.68 0.854755
Target:  5'- gGGCGCCGGcccCCUACAGAGGUcccaGUAu -3'
miRNA:   3'- -UCGCGGUCuucGGGUGUCUCUA----CAUu -5'
28979 3' -54.6 NC_006146.1 + 169420 0.69 0.812264
Target:  5'- gAG-GCCacguguGGAGGCCCGCGGAGAggccgUGUGu -3'
miRNA:   3'- -UCgCGG------UCUUCGGGUGUCUCU-----ACAUu -5'
28979 3' -54.6 NC_006146.1 + 168488 0.69 0.812264
Target:  5'- gAG-GCCacguguGGAGGCCCGCGGAGAggccgUGUGu -3'
miRNA:   3'- -UCgCGG------UCUUCGGGUGUCUCU-----ACAUu -5'
28979 3' -54.6 NC_006146.1 + 27135 1.06 0.004798
Target:  5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3'
miRNA:   3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5'
28979 3' -54.6 NC_006146.1 + 170351 0.69 0.812264
Target:  5'- gAG-GCCacguguGGAGGCCCGCGGAGAggccgUGUGu -3'
miRNA:   3'- -UCgCGG------UCUUCGGGUGUCUCU-----ACAUu -5'
28979 3' -54.6 NC_006146.1 + 159976 0.75 0.459867
Target:  5'- uGGCGCgCAGGAGCCCGCAGuuGggGUc- -3'
miRNA:   3'- -UCGCG-GUCUUCGGGUGUCu-CuaCAuu -5'
28979 3' -54.6 NC_006146.1 + 167556 0.69 0.812264
Target:  5'- gAG-GCCacguguGGAGGCCCGCGGAGAggccgUGUGu -3'
miRNA:   3'- -UCgCGG------UCUUCGGGUGUCUCU-----ACAUu -5'
28979 3' -54.6 NC_006146.1 + 85646 0.68 0.854755
Target:  5'- aGGgGCUGGuuGGCCCACGGGGAcccugGUGGa -3'
miRNA:   3'- -UCgCGGUCu-UCGGGUGUCUCUa----CAUU- -5'
28979 3' -54.6 NC_006146.1 + 54997 0.67 0.877767
Target:  5'- gGGUgGCCGGAAGCCCcccggGCGG-GAUGg-- -3'
miRNA:   3'- -UCG-CGGUCUUCGGG-----UGUCuCUACauu -5'
28979 3' -54.6 NC_006146.1 + 167654 0.72 0.62186
Target:  5'- cGUGCCGGggGCCCGgGGGcGUGUc- -3'
miRNA:   3'- uCGCGGUCuuCGGGUgUCUcUACAuu -5'
28979 3' -54.6 NC_006146.1 + 156292 0.71 0.715593
Target:  5'- cAGCGCCAGcAGggCACAGAGGUGa-- -3'
miRNA:   3'- -UCGCGGUCuUCggGUGUCUCUACauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.