miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28979 3' -54.6 NC_006146.1 + 14824 1.06 0.004798
Target:  5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3'
miRNA:   3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5'
28979 3' -54.6 NC_006146.1 + 31014 0.71 0.684677
Target:  5'- uAGCGaCCcuAGGUCCACAGAGAcGUAAu -3'
miRNA:   3'- -UCGC-GGucUUCGGGUGUCUCUaCAUU- -5'
28979 3' -54.6 NC_006146.1 + 127072 0.68 0.868802
Target:  5'- cGGCGCgGGAAGCCgaaagggccaggGCGGAGcgGUGGg -3'
miRNA:   3'- -UCGCGgUCUUCGGg-----------UGUCUCuaCAUU- -5'
28979 3' -54.6 NC_006146.1 + 156919 0.67 0.877767
Target:  5'- uGCGCCAGGcuggacccccggAGCCUggACGGGGAggcgGUGg -3'
miRNA:   3'- uCGCGGUCU------------UCGGG--UGUCUCUa---CAUu -5'
28979 3' -54.6 NC_006146.1 + 105273 0.67 0.905206
Target:  5'- uGCGCCAGGcgcucgAGCCCuuugaggaccAUGGAcGAUGUGAc -3'
miRNA:   3'- uCGCGGUCU------UCGGG----------UGUCU-CUACAUU- -5'
28979 3' -54.6 NC_006146.1 + 8509 0.66 0.922647
Target:  5'- gAGgGUCGGggGCCCuaacagcACAGAGAg---- -3'
miRNA:   3'- -UCgCGGUCuuCGGG-------UGUCUCUacauu -5'
28979 3' -54.6 NC_006146.1 + 82953 0.66 0.928711
Target:  5'- gGGCGCaaAGggGCuUCAC-GAGGUGUAGa -3'
miRNA:   3'- -UCGCGg-UCuuCG-GGUGuCUCUACAUU- -5'
28979 3' -54.6 NC_006146.1 + 61695 0.66 0.928711
Target:  5'- gGGCGgCAGggGCCUccuCGGAGcccugGUGAu -3'
miRNA:   3'- -UCGCgGUCuuCGGGu--GUCUCua---CAUU- -5'
28979 3' -54.6 NC_006146.1 + 95841 0.66 0.933959
Target:  5'- cGgGCguGggGUgCACGGGGAUGg-- -3'
miRNA:   3'- uCgCGguCuuCGgGUGUCUCUACauu -5'
28979 3' -54.6 NC_006146.1 + 42222 0.66 0.938957
Target:  5'- cGGCGUgAGcccGGGCCCAgAGGGA-GUAGc -3'
miRNA:   3'- -UCGCGgUC---UUCGGGUgUCUCUaCAUU- -5'
28979 3' -54.6 NC_006146.1 + 69172 0.68 0.870319
Target:  5'- uGCGCCGGuGG-CCGCGGGGGcgGUGAc -3'
miRNA:   3'- uCGCGGUCuUCgGGUGUCUCUa-CAUU- -5'
28979 3' -54.6 NC_006146.1 + 142026 0.69 0.812264
Target:  5'- uGUGagaCUAGAGGCCCacaaaaGCAGAGGUGUGc -3'
miRNA:   3'- uCGC---GGUCUUCGGG------UGUCUCUACAUu -5'
28979 3' -54.6 NC_006146.1 + 4573 0.73 0.611368
Target:  5'- uGGCGUCggccugGGGAGCCCGCGGGGccGUGg -3'
miRNA:   3'- -UCGCGG------UCUUCGGGUGUCUCuaCAUu -5'
28979 3' -54.6 NC_006146.1 + 31438 0.73 0.611368
Target:  5'- gAG-GCCugcauGGAGCCCACGGAGAcUGUGu -3'
miRNA:   3'- -UCgCGGu----CUUCGGGUGUCUCU-ACAUu -5'
28979 3' -54.6 NC_006146.1 + 152135 0.71 0.715593
Target:  5'- uGCGCCAGcGGCCCcUAGAGAg---- -3'
miRNA:   3'- uCGCGGUCuUCGGGuGUCUCUacauu -5'
28979 3' -54.6 NC_006146.1 + 68223 0.71 0.70535
Target:  5'- gAGCGCCaAGAAGCagCCGCAGGGGg---- -3'
miRNA:   3'- -UCGCGG-UCUUCG--GGUGUCUCUacauu -5'
28979 3' -54.6 NC_006146.1 + 58342 0.7 0.745833
Target:  5'- aGGCG-CAGAAGCCgGcCAGGGcAUGUAAa -3'
miRNA:   3'- -UCGCgGUCUUCGGgU-GUCUC-UACAUU- -5'
28979 3' -54.6 NC_006146.1 + 56769 0.7 0.765486
Target:  5'- cGGCGcCCGGccGCCCcugACGGAGGUGg-- -3'
miRNA:   3'- -UCGC-GGUCuuCGGG---UGUCUCUACauu -5'
28979 3' -54.6 NC_006146.1 + 127205 0.69 0.794004
Target:  5'- uGCGCaggcuGGGAGCCCACAGAGc----- -3'
miRNA:   3'- uCGCGg----UCUUCGGGUGUCUCuacauu -5'
28979 3' -54.6 NC_006146.1 + 110365 0.69 0.803216
Target:  5'- cGGCGCU-GAGGCCCuggACAGAGAUc--- -3'
miRNA:   3'- -UCGCGGuCUUCGGG---UGUCUCUAcauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.