Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28979 | 3' | -54.6 | NC_006146.1 | + | 54206 | 0.66 | 0.938957 |
Target: 5'- aGGCGCCAccuGGugccGGCCCugAGGGAa---- -3' miRNA: 3'- -UCGCGGU---CU----UCGGGugUCUCUacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 4573 | 0.73 | 0.611368 |
Target: 5'- uGGCGUCggccugGGGAGCCCGCGGGGccGUGg -3' miRNA: 3'- -UCGCGG------UCUUCGGGUGUCUCuaCAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 31438 | 0.73 | 0.611368 |
Target: 5'- gAG-GCCugcauGGAGCCCACGGAGAcUGUGu -3' miRNA: 3'- -UCgCGGu----CUUCGGGUGUCUCU-ACAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 68223 | 0.71 | 0.70535 |
Target: 5'- gAGCGCCaAGAAGCagCCGCAGGGGg---- -3' miRNA: 3'- -UCGCGG-UCUUCG--GGUGUCUCUacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 152135 | 0.71 | 0.715593 |
Target: 5'- uGCGCCAGcGGCCCcUAGAGAg---- -3' miRNA: 3'- uCGCGGUCuUCGGGuGUCUCUacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 58342 | 0.7 | 0.745833 |
Target: 5'- aGGCG-CAGAAGCCgGcCAGGGcAUGUAAa -3' miRNA: 3'- -UCGCgGUCUUCGGgU-GUCUC-UACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 56769 | 0.7 | 0.765486 |
Target: 5'- cGGCGcCCGGccGCCCcugACGGAGGUGg-- -3' miRNA: 3'- -UCGC-GGUCuuCGGG---UGUCUCUACauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 127205 | 0.69 | 0.794004 |
Target: 5'- uGCGCaggcuGGGAGCCCACAGAGc----- -3' miRNA: 3'- uCGCGg----UCUUCGGGUGUCUCuacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 110365 | 0.69 | 0.803216 |
Target: 5'- cGGCGCU-GAGGCCCuggACAGAGAUc--- -3' miRNA: 3'- -UCGCGGuCUUCGGG---UGUCUCUAcauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 142026 | 0.69 | 0.812264 |
Target: 5'- uGUGagaCUAGAGGCCCacaaaaGCAGAGGUGUGc -3' miRNA: 3'- uCGC---GGUCUUCGGG------UGUCUCUACAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 69172 | 0.68 | 0.870319 |
Target: 5'- uGCGCCGGuGG-CCGCGGGGGcgGUGAc -3' miRNA: 3'- uCGCGGUCuUCgGGUGUCUCUa-CAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 42222 | 0.66 | 0.938957 |
Target: 5'- cGGCGUgAGcccGGGCCCAgAGGGA-GUAGc -3' miRNA: 3'- -UCGCGgUC---UUCGGGUgUCUCUaCAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 95841 | 0.66 | 0.933959 |
Target: 5'- cGgGCguGggGUgCACGGGGAUGg-- -3' miRNA: 3'- uCgCGguCuuCGgGUGUCUCUACauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 61695 | 0.66 | 0.928711 |
Target: 5'- gGGCGgCAGggGCCUccuCGGAGcccugGUGAu -3' miRNA: 3'- -UCGCgGUCuuCGGGu--GUCUCua---CAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 82953 | 0.66 | 0.928711 |
Target: 5'- gGGCGCaaAGggGCuUCAC-GAGGUGUAGa -3' miRNA: 3'- -UCGCGg-UCuuCG-GGUGuCUCUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 8509 | 0.66 | 0.922647 |
Target: 5'- gAGgGUCGGggGCCCuaacagcACAGAGAg---- -3' miRNA: 3'- -UCgCGGUCuuCGGG-------UGUCUCUacauu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 105273 | 0.67 | 0.905206 |
Target: 5'- uGCGCCAGGcgcucgAGCCCuuugaggaccAUGGAcGAUGUGAc -3' miRNA: 3'- uCGCGGUCU------UCGGG----------UGUCU-CUACAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 156919 | 0.67 | 0.877767 |
Target: 5'- uGCGCCAGGcuggacccccggAGCCUggACGGGGAggcgGUGg -3' miRNA: 3'- uCGCGGUCU------------UCGGG--UGUCUCUa---CAUu -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 74722 | 0.66 | 0.923211 |
Target: 5'- cAGgGCCAGAaaGGCCCugGaGGGAcccaGUGAg -3' miRNA: 3'- -UCgCGGUCU--UCGGGugU-CUCUa---CAUU- -5' |
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28979 | 3' | -54.6 | NC_006146.1 | + | 17902 | 1.06 | 0.004798 |
Target: 5'- gAGCGCCAGAAGCCCACAGAGAUGUAAg -3' miRNA: 3'- -UCGCGGUCUUCGGGUGUCUCUACAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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