miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28979 5' -55.8 NC_006146.1 + 12610 0.71 0.665025
Target:  5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3'
miRNA:   3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 24923 0.71 0.665025
Target:  5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3'
miRNA:   3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 92787 0.71 0.665025
Target:  5'- cUCUGCCUCucagGCUUcccuGUCUUCCGGGCc -3'
miRNA:   3'- aAGAUGGAG----UGAGau--CGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 28000 0.71 0.665025
Target:  5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3'
miRNA:   3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 13195 0.71 0.675302
Target:  5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3'
miRNA:   3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5'
28979 5' -55.8 NC_006146.1 + 16273 0.71 0.675302
Target:  5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3'
miRNA:   3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5'
28979 5' -55.8 NC_006146.1 + 19351 0.71 0.675302
Target:  5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3'
miRNA:   3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5'
28979 5' -55.8 NC_006146.1 + 22429 0.71 0.675302
Target:  5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3'
miRNA:   3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5'
28979 5' -55.8 NC_006146.1 + 25507 0.71 0.675302
Target:  5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3'
miRNA:   3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5'
28979 5' -55.8 NC_006146.1 + 28585 0.71 0.675302
Target:  5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3'
miRNA:   3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5'
28979 5' -55.8 NC_006146.1 + 156715 0.7 0.695738
Target:  5'- aUCUcGCCUCccGCUC---CCCUCCGGGCc -3'
miRNA:   3'- aAGA-UGGAG--UGAGaucGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 155852 0.7 0.713947
Target:  5'- --gUGCCUC-CUCgcaggcccggcgGGCCCUggCCAGGCg -3'
miRNA:   3'- aagAUGGAGuGAGa-----------UCGGGA--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 74930 0.7 0.735884
Target:  5'- -gCUGgCUCACUg-GGuCCCUCCAGGg -3'
miRNA:   3'- aaGAUgGAGUGAgaUC-GGGAGGUCCg -5'
28979 5' -55.8 NC_006146.1 + 153287 0.69 0.745714
Target:  5'- gUUCUGCCUUuucuGCUCcaggcaccaGGCCCgggCCAGGUc -3'
miRNA:   3'- -AAGAUGGAG----UGAGa--------UCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 41624 0.69 0.755443
Target:  5'- aUCUaggaGCCUagaaaACUCggguGCCCcCCAGGCg -3'
miRNA:   3'- aAGA----UGGAg----UGAGau--CGGGaGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 167607 0.69 0.774559
Target:  5'- ---gACCcCGCgCUGGCCCccgCCAGGCc -3'
miRNA:   3'- aagaUGGaGUGaGAUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 168539 0.69 0.774559
Target:  5'- ---gACCcCGCgCUGGCCCccgCCAGGCc -3'
miRNA:   3'- aagaUGGaGUGaGAUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 169471 0.69 0.774559
Target:  5'- ---gACCcCGCgCUGGCCCccgCCAGGCc -3'
miRNA:   3'- aagaUGGaGUGaGAUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 170402 0.69 0.774559
Target:  5'- ---gACCcCGCgCUGGCCCccgCCAGGCc -3'
miRNA:   3'- aagaUGGaGUGaGAUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 130583 0.69 0.783926
Target:  5'- cUCUGCCUCGgaggCUuGCUgUCCAGGUu -3'
miRNA:   3'- aAGAUGGAGUga--GAuCGGgAGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.