Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28979 | 5' | -55.8 | NC_006146.1 | + | 109576 | 0.69 | 0.783926 |
Target: 5'- --gUGCCUCGCcggCUAGgCCacCCGGGCa -3' miRNA: 3'- aagAUGGAGUGa--GAUCgGGa-GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 156493 | 0.68 | 0.802236 |
Target: 5'- cUCUACaUCAcCUCUGuGCCCUgCuGGCg -3' miRNA: 3'- aAGAUGgAGU-GAGAU-CGGGAgGuCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 126923 | 0.68 | 0.814683 |
Target: 5'- cUCaGCCUC-CUCUcccgcuggcaggaugGcGCUCUCCGGGCg -3' miRNA: 3'- aAGaUGGAGuGAGA---------------U-CGGGAGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 33140 | 0.68 | 0.819918 |
Target: 5'- -gCUGCCcCGCUCcggguggggggUGGCCCggCUGGGCa -3' miRNA: 3'- aaGAUGGaGUGAG-----------AUCGGGa-GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 109332 | 0.68 | 0.819918 |
Target: 5'- cUCUuCCUCAgCg-UGGCCCUCgGGGUg -3' miRNA: 3'- aAGAuGGAGU-GagAUCGGGAGgUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 33264 | 0.68 | 0.819918 |
Target: 5'- -gCUGCCcCGCUCcggguggggggUGGCCCggCUGGGCa -3' miRNA: 3'- aaGAUGGaGUGAG-----------AUCGGGa-GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 161473 | 0.68 | 0.828502 |
Target: 5'- cUUCgugACCUCGgUCU--CCC-CCAGGCg -3' miRNA: 3'- -AAGa--UGGAGUgAGAucGGGaGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 126304 | 0.68 | 0.828502 |
Target: 5'- -cCUGCCUCugUuccucaggcgaCUcGUCCUCCuGGCa -3' miRNA: 3'- aaGAUGGAGugA-----------GAuCGGGAGGuCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 65188 | 0.67 | 0.853131 |
Target: 5'- cUCUuggaGCCcuaggCGCUCUgggGGCCCUgggagcCCGGGCg -3' miRNA: 3'- aAGA----UGGa----GUGAGA---UCGGGA------GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 100256 | 0.67 | 0.853131 |
Target: 5'- ---gGCCUCAUcuUCcAGCCCUCUucccGGCg -3' miRNA: 3'- aagaUGGAGUG--AGaUCGGGAGGu---CCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 155068 | 0.67 | 0.860942 |
Target: 5'- cUCUAUCcaaUCGCUC-GGCUCgaugCCGGGCc -3' miRNA: 3'- aAGAUGG---AGUGAGaUCGGGa---GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 67215 | 0.67 | 0.860942 |
Target: 5'- ---gGCCggUCGC-CUGGCCggCCAGGCa -3' miRNA: 3'- aagaUGG--AGUGaGAUCGGgaGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 32062 | 0.67 | 0.875926 |
Target: 5'- aUUCc-CCUCGcCUCUAaCCCugUCCGGGCg -3' miRNA: 3'- -AAGauGGAGU-GAGAUcGGG--AGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 133036 | 0.67 | 0.883088 |
Target: 5'- cUCUACugCUCGCcggguacgUCUGGCgUCUCCAGGg -3' miRNA: 3'- aAGAUG--GAGUG--------AGAUCG-GGAGGUCCg -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 99511 | 0.66 | 0.889339 |
Target: 5'- ---gGCUUCcgcagcaGgUCUGGCCCUgaCCAGGCg -3' miRNA: 3'- aagaUGGAG-------UgAGAUCGGGA--GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 33386 | 0.66 | 0.890022 |
Target: 5'- -gCUGCCcCGCUCcggguggggggUGGCCCgCCuGGGCa -3' miRNA: 3'- aaGAUGGaGUGAG-----------AUCGGGaGG-UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 62817 | 0.66 | 0.896726 |
Target: 5'- -cCUGCCUCuCUUguGCCUguggcCCAGGCu -3' miRNA: 3'- aaGAUGGAGuGAGauCGGGa----GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 126432 | 0.66 | 0.896726 |
Target: 5'- cUC-ACCUCGC-CcGGCagugaCUCCGGGCc -3' miRNA: 3'- aAGaUGGAGUGaGaUCGg----GAGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 62583 | 0.66 | 0.896726 |
Target: 5'- cUCUuCCUCGCgagCUgaacggccaggGGCCuCUCCGGcGCg -3' miRNA: 3'- aAGAuGGAGUGa--GA-----------UCGG-GAGGUC-CG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 99274 | 0.66 | 0.902558 |
Target: 5'- ---gACCUgGCUgcgGGCCCUCCAccacuacGGCa -3' miRNA: 3'- aagaUGGAgUGAga-UCGGGAGGU-------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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