Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28979 | 5' | -55.8 | NC_006146.1 | + | 28585 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 25507 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 16273 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 13195 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 15689 | 0.71 | 0.665025 |
Target: 5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3' miRNA: 3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 92787 | 0.71 | 0.665025 |
Target: 5'- cUCUGCCUCucagGCUUcccuGUCUUCCGGGCc -3' miRNA: 3'- aAGAUGGAG----UGAGau--CGGGAGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 12610 | 0.71 | 0.665025 |
Target: 5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3' miRNA: 3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 18767 | 0.71 | 0.665025 |
Target: 5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3' miRNA: 3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 21845 | 0.71 | 0.665025 |
Target: 5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3' miRNA: 3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 24923 | 0.71 | 0.665025 |
Target: 5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3' miRNA: 3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 28000 | 0.71 | 0.665025 |
Target: 5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3' miRNA: 3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 85815 | 0.72 | 0.623734 |
Target: 5'- gUCUGCCUC--UCUGGCCCUuugccCCGGuGCc -3' miRNA: 3'- aAGAUGGAGugAGAUCGGGA-----GGUC-CG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 62506 | 0.72 | 0.603094 |
Target: 5'- cUCUgGCCUCGCUg-GGCUCUCcCAGGUa -3' miRNA: 3'- aAGA-UGGAGUGAgaUCGGGAG-GUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 13237 | 0.72 | 0.603094 |
Target: 5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3' miRNA: 3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 19393 | 0.72 | 0.603094 |
Target: 5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3' miRNA: 3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 22471 | 0.72 | 0.603094 |
Target: 5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3' miRNA: 3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 25549 | 0.72 | 0.603094 |
Target: 5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3' miRNA: 3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 28627 | 0.72 | 0.603094 |
Target: 5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3' miRNA: 3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 16315 | 0.72 | 0.603094 |
Target: 5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3' miRNA: 3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 100934 | 0.73 | 0.562135 |
Target: 5'- gUUCUuggccauCCUCaaGCUCUGGUCCaUCCAGGUc -3' miRNA: 3'- -AAGAu------GGAG--UGAGAUCGGG-AGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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