miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28979 5' -55.8 NC_006146.1 + 99274 0.66 0.902558
Target:  5'- ---gACCUgGCUgcgGGCCCUCCAccacuacGGCa -3'
miRNA:   3'- aagaUGGAgUGAga-UCGGGAGGU-------CCG- -5'
28979 5' -55.8 NC_006146.1 + 99511 0.66 0.889339
Target:  5'- ---gGCUUCcgcagcaGgUCUGGCCCUgaCCAGGCg -3'
miRNA:   3'- aagaUGGAG-------UgAGAUCGGGA--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 100256 0.67 0.853131
Target:  5'- ---gGCCUCAUcuUCcAGCCCUCUucccGGCg -3'
miRNA:   3'- aagaUGGAGUG--AGaUCGGGAGGu---CCG- -5'
28979 5' -55.8 NC_006146.1 + 100934 0.73 0.562135
Target:  5'- gUUCUuggccauCCUCaaGCUCUGGUCCaUCCAGGUc -3'
miRNA:   3'- -AAGAu------GGAG--UGAGAUCGGG-AGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 101651 0.74 0.502295
Target:  5'- gUCcACCUC-CUCcAGCuCCUCCAGGUc -3'
miRNA:   3'- aAGaUGGAGuGAGaUCG-GGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 101947 0.66 0.915415
Target:  5'- cUCUGCCcUGCcccCUGGCUaggggCUCCGGGCu -3'
miRNA:   3'- aAGAUGGaGUGa--GAUCGG-----GAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 109332 0.68 0.819918
Target:  5'- cUCUuCCUCAgCg-UGGCCCUCgGGGUg -3'
miRNA:   3'- aAGAuGGAGU-GagAUCGGGAGgUCCG- -5'
28979 5' -55.8 NC_006146.1 + 109576 0.69 0.783926
Target:  5'- --gUGCCUCGCcggCUAGgCCacCCGGGCa -3'
miRNA:   3'- aagAUGGAGUGa--GAUCgGGa-GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 126304 0.68 0.828502
Target:  5'- -cCUGCCUCugUuccucaggcgaCUcGUCCUCCuGGCa -3'
miRNA:   3'- aaGAUGGAGugA-----------GAuCGGGAGGuCCG- -5'
28979 5' -55.8 NC_006146.1 + 126432 0.66 0.896726
Target:  5'- cUC-ACCUCGC-CcGGCagugaCUCCGGGCc -3'
miRNA:   3'- aAGaUGGAGUGaGaUCGg----GAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 126923 0.68 0.814683
Target:  5'- cUCaGCCUC-CUCUcccgcuggcaggaugGcGCUCUCCGGGCg -3'
miRNA:   3'- aAGaUGGAGuGAGA---------------U-CGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 127424 0.66 0.903194
Target:  5'- cUCgcaUUCGCUCcaGGCCCUCCgagaAGGCc -3'
miRNA:   3'- aAGaugGAGUGAGa-UCGGGAGG----UCCG- -5'
28979 5' -55.8 NC_006146.1 + 130583 0.69 0.783926
Target:  5'- cUCUGCCUCGgaggCUuGCUgUCCAGGUu -3'
miRNA:   3'- aAGAUGGAGUga--GAuCGGgAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 133036 0.67 0.883088
Target:  5'- cUCUACugCUCGCcggguacgUCUGGCgUCUCCAGGg -3'
miRNA:   3'- aAGAUG--GAGUG--------AGAUCG-GGAGGUCCg -5'
28979 5' -55.8 NC_006146.1 + 143776 0.73 0.562135
Target:  5'- -cCUGCUUCAa-CUGGCCCUCCAaaaacagcggguGGCg -3'
miRNA:   3'- aaGAUGGAGUgaGAUCGGGAGGU------------CCG- -5'
28979 5' -55.8 NC_006146.1 + 144351 0.66 0.915415
Target:  5'- -cUUGCCcCACUac-GCCCaCCAGGCu -3'
miRNA:   3'- aaGAUGGaGUGAgauCGGGaGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 147517 0.66 0.909425
Target:  5'- aUCUACCcCAg-CUGcGUCUUCCAGGUg -3'
miRNA:   3'- aAGAUGGaGUgaGAU-CGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 153287 0.69 0.745714
Target:  5'- gUUCUGCCUUuucuGCUCcaggcaccaGGCCCgggCCAGGUc -3'
miRNA:   3'- -AAGAUGGAG----UGAGa--------UCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 155010 0.66 0.903194
Target:  5'- --gUugCUgGCUCgaggccagcgAGCCCUCC-GGCa -3'
miRNA:   3'- aagAugGAgUGAGa---------UCGGGAGGuCCG- -5'
28979 5' -55.8 NC_006146.1 + 155068 0.67 0.860942
Target:  5'- cUCUAUCcaaUCGCUC-GGCUCgaugCCGGGCc -3'
miRNA:   3'- aAGAUGG---AGUGAGaUCGGGa---GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.