miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28979 5' -55.8 NC_006146.1 + 109576 0.69 0.783926
Target:  5'- --gUGCCUCGCcggCUAGgCCacCCGGGCa -3'
miRNA:   3'- aagAUGGAGUGa--GAUCgGGa-GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 109332 0.68 0.819918
Target:  5'- cUCUuCCUCAgCg-UGGCCCUCgGGGUg -3'
miRNA:   3'- aAGAuGGAGU-GagAUCGGGAGgUCCG- -5'
28979 5' -55.8 NC_006146.1 + 101947 0.66 0.915415
Target:  5'- cUCUGCCcUGCcccCUGGCUaggggCUCCGGGCu -3'
miRNA:   3'- aAGAUGGaGUGa--GAUCGG-----GAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 101651 0.74 0.502295
Target:  5'- gUCcACCUC-CUCcAGCuCCUCCAGGUc -3'
miRNA:   3'- aAGaUGGAGuGAGaUCG-GGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 100934 0.73 0.562135
Target:  5'- gUUCUuggccauCCUCaaGCUCUGGUCCaUCCAGGUc -3'
miRNA:   3'- -AAGAu------GGAG--UGAGAUCGGG-AGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 100256 0.67 0.853131
Target:  5'- ---gGCCUCAUcuUCcAGCCCUCUucccGGCg -3'
miRNA:   3'- aagaUGGAGUG--AGaUCGGGAGGu---CCG- -5'
28979 5' -55.8 NC_006146.1 + 99511 0.66 0.889339
Target:  5'- ---gGCUUCcgcagcaGgUCUGGCCCUgaCCAGGCg -3'
miRNA:   3'- aagaUGGAG-------UgAGAUCGGGA--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 99274 0.66 0.902558
Target:  5'- ---gACCUgGCUgcgGGCCCUCCAccacuacGGCa -3'
miRNA:   3'- aagaUGGAgUGAga-UCGGGAGGU-------CCG- -5'
28979 5' -55.8 NC_006146.1 + 92787 0.71 0.665025
Target:  5'- cUCUGCCUCucagGCUUcccuGUCUUCCGGGCc -3'
miRNA:   3'- aAGAUGGAG----UGAGau--CGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 90446 0.66 0.909425
Target:  5'- -aCUGCCUCcucCUCUaccucGGCCuCUCCcucGGCu -3'
miRNA:   3'- aaGAUGGAGu--GAGA-----UCGG-GAGGu--CCG- -5'
28979 5' -55.8 NC_006146.1 + 88326 0.66 0.909425
Target:  5'- gUUUGCCUUAUggaauGCUCUCCcAGGCu -3'
miRNA:   3'- aAGAUGGAGUGagau-CGGGAGG-UCCG- -5'
28979 5' -55.8 NC_006146.1 + 85815 0.72 0.623734
Target:  5'- gUCUGCCUC--UCUGGCCCUuugccCCGGuGCc -3'
miRNA:   3'- aAGAUGGAGugAGAUCGGGA-----GGUC-CG- -5'
28979 5' -55.8 NC_006146.1 + 84563 0.66 0.903194
Target:  5'- aUCcACCUcCACcaauggCUGGCCUucaucagcuUCCGGGCa -3'
miRNA:   3'- aAGaUGGA-GUGa-----GAUCGGG---------AGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 74930 0.7 0.735884
Target:  5'- -gCUGgCUCACUg-GGuCCCUCCAGGg -3'
miRNA:   3'- aaGAUgGAGUGAgaUC-GGGAGGUCCg -5'
28979 5' -55.8 NC_006146.1 + 67215 0.67 0.860942
Target:  5'- ---gGCCggUCGC-CUGGCCggCCAGGCa -3'
miRNA:   3'- aagaUGG--AGUGaGAUCGGgaGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 65188 0.67 0.853131
Target:  5'- cUCUuggaGCCcuaggCGCUCUgggGGCCCUgggagcCCGGGCg -3'
miRNA:   3'- aAGA----UGGa----GUGAGA---UCGGGA------GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 62817 0.66 0.896726
Target:  5'- -cCUGCCUCuCUUguGCCUguggcCCAGGCu -3'
miRNA:   3'- aaGAUGGAGuGAGauCGGGa----GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 62583 0.66 0.896726
Target:  5'- cUCUuCCUCGCgagCUgaacggccaggGGCCuCUCCGGcGCg -3'
miRNA:   3'- aAGAuGGAGUGa--GA-----------UCGG-GAGGUC-CG- -5'
28979 5' -55.8 NC_006146.1 + 62506 0.72 0.603094
Target:  5'- cUCUgGCCUCGCUg-GGCUCUCcCAGGUa -3'
miRNA:   3'- aAGA-UGGAGUGAgaUCGGGAG-GUCCG- -5'
28979 5' -55.8 NC_006146.1 + 55960 0.78 0.306275
Target:  5'- ---gGCCUCGCUgcccCUGGCCCgccgCCGGGCg -3'
miRNA:   3'- aagaUGGAGUGA----GAUCGGGa---GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.