miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28979 5' -55.8 NC_006146.1 + 14860 1.08 0.003167
Target:  5'- cUUCUACCUCACUCUAGCCCUCCAGGCc -3'
miRNA:   3'- -AAGAUGGAGUGAGAUCGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 21845 0.71 0.665025
Target:  5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3'
miRNA:   3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 28000 0.71 0.665025
Target:  5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3'
miRNA:   3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 144351 0.66 0.915415
Target:  5'- -cUUGCCcCACUac-GCCCaCCAGGCu -3'
miRNA:   3'- aaGAUGGaGUGAgauCGGGaGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 27171 1.08 0.003167
Target:  5'- cUUCUACCUCACUCUAGCCCUCCAGGCc -3'
miRNA:   3'- -AAGAUGGAGUGAGAUCGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 101651 0.74 0.502295
Target:  5'- gUCcACCUC-CUCcAGCuCCUCCAGGUc -3'
miRNA:   3'- aAGaUGGAGuGAGaUCG-GGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 13237 0.72 0.603094
Target:  5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3'
miRNA:   3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5'
28979 5' -55.8 NC_006146.1 + 16315 0.72 0.603094
Target:  5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3'
miRNA:   3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5'
28979 5' -55.8 NC_006146.1 + 25549 0.72 0.603094
Target:  5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3'
miRNA:   3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5'
28979 5' -55.8 NC_006146.1 + 18767 0.71 0.665025
Target:  5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3'
miRNA:   3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 92787 0.71 0.665025
Target:  5'- cUCUGCCUCucagGCUUcccuGUCUUCCGGGCc -3'
miRNA:   3'- aAGAUGGAG----UGAGau--CGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 22471 0.72 0.603094
Target:  5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3'
miRNA:   3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5'
28979 5' -55.8 NC_006146.1 + 17938 1.08 0.003167
Target:  5'- cUUCUACCUCACUCUAGCCCUCCAGGCc -3'
miRNA:   3'- -AAGAUGGAGUGAGAUCGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 12610 0.71 0.665025
Target:  5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3'
miRNA:   3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 21015 1.08 0.003167
Target:  5'- cUUCUACCUCACUCUAGCCCUCCAGGCc -3'
miRNA:   3'- -AAGAUGGAGUGAGAUCGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 19393 0.72 0.603094
Target:  5'- cUCUGCCccUCuCUCU-GUCCUCCAGGg -3'
miRNA:   3'- aAGAUGG--AGuGAGAuCGGGAGGUCCg -5'
28979 5' -55.8 NC_006146.1 + 15689 0.71 0.665025
Target:  5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3'
miRNA:   3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 24923 0.71 0.665025
Target:  5'- cUCgagGCCUCAC---AGCCCaggCCAGGCc -3'
miRNA:   3'- aAGa--UGGAGUGagaUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 24093 1.08 0.003167
Target:  5'- cUUCUACCUCACUCUAGCCCUCCAGGCc -3'
miRNA:   3'- -AAGAUGGAGUGAGAUCGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 100934 0.73 0.562135
Target:  5'- gUUCUuggccauCCUCaaGCUCUGGUCCaUCCAGGUc -3'
miRNA:   3'- -AAGAu------GGAG--UGAGAUCGGG-AGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.