Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28979 | 5' | -55.8 | NC_006146.1 | + | 33264 | 0.68 | 0.819918 |
Target: 5'- -gCUGCCcCGCUCcggguggggggUGGCCCggCUGGGCa -3' miRNA: 3'- aaGAUGGaGUGAG-----------AUCGGGa-GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 33140 | 0.68 | 0.819918 |
Target: 5'- -gCUGCCcCGCUCcggguggggggUGGCCCggCUGGGCa -3' miRNA: 3'- aaGAUGGaGUGAG-----------AUCGGGa-GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 28585 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 19351 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 133036 | 0.67 | 0.883088 |
Target: 5'- cUCUACugCUCGCcggguacgUCUGGCgUCUCCAGGg -3' miRNA: 3'- aAGAUG--GAGUG--------AGAUCG-GGAGGUCCg -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 67215 | 0.67 | 0.860942 |
Target: 5'- ---gGCCggUCGC-CUGGCCggCCAGGCa -3' miRNA: 3'- aagaUGG--AGUGaGAUCGGgaGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 109576 | 0.69 | 0.783926 |
Target: 5'- --gUGCCUCGCcggCUAGgCCacCCGGGCa -3' miRNA: 3'- aagAUGGAGUGa--GAUCgGGa-GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 16273 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 65188 | 0.67 | 0.853131 |
Target: 5'- cUCUuggaGCCcuaggCGCUCUgggGGCCCUgggagcCCGGGCg -3' miRNA: 3'- aAGA----UGGa----GUGAGA---UCGGGA------GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 13195 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 126923 | 0.68 | 0.814683 |
Target: 5'- cUCaGCCUC-CUCUcccgcuggcaggaugGcGCUCUCCGGGCg -3' miRNA: 3'- aAGaUGGAGuGAGA---------------U-CGGGAGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 109332 | 0.68 | 0.819918 |
Target: 5'- cUCUuCCUCAgCg-UGGCCCUCgGGGUg -3' miRNA: 3'- aAGAuGGAGU-GagAUCGGGAGgUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 153287 | 0.69 | 0.745714 |
Target: 5'- gUUCUGCCUUuucuGCUCcaggcaccaGGCCCgggCCAGGUc -3' miRNA: 3'- -AAGAUGGAG----UGAGa--------UCGGGa--GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 155852 | 0.7 | 0.713947 |
Target: 5'- --gUGCCUC-CUCgcaggcccggcgGGCCCUggCCAGGCg -3' miRNA: 3'- aagAUGGAGuGAGa-----------UCGGGA--GGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 25507 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 22429 | 0.71 | 0.675302 |
Target: 5'- ---gGCCUCGCUCcgGGCgCCUCCucGGGUu -3' miRNA: 3'- aagaUGGAGUGAGa-UCG-GGAGG--UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 144351 | 0.66 | 0.915415 |
Target: 5'- -cUUGCCcCACUac-GCCCaCCAGGCu -3' miRNA: 3'- aaGAUGGaGUGAgauCGGGaGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 33386 | 0.66 | 0.890022 |
Target: 5'- -gCUGCCcCGCUCcggguggggggUGGCCCgCCuGGGCa -3' miRNA: 3'- aaGAUGGaGUGAG-----------AUCGGGaGG-UCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 32062 | 0.67 | 0.875926 |
Target: 5'- aUUCc-CCUCGcCUCUAaCCCugUCCGGGCg -3' miRNA: 3'- -AAGauGGAGU-GAGAUcGGG--AGGUCCG- -5' |
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28979 | 5' | -55.8 | NC_006146.1 | + | 155068 | 0.67 | 0.860942 |
Target: 5'- cUCUAUCcaaUCGCUC-GGCUCgaugCCGGGCc -3' miRNA: 3'- aAGAUGG---AGUGAGaUCGGGa---GGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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