miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28979 5' -55.8 NC_006146.1 + 143776 0.73 0.562135
Target:  5'- -cCUGCUUCAa-CUGGCCCUCCAaaaacagcggguGGCg -3'
miRNA:   3'- aaGAUGGAGUgaGAUCGGGAGGU------------CCG- -5'
28979 5' -55.8 NC_006146.1 + 168539 0.69 0.774559
Target:  5'- ---gACCcCGCgCUGGCCCccgCCAGGCc -3'
miRNA:   3'- aagaUGGaGUGaGAUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 169471 0.69 0.774559
Target:  5'- ---gACCcCGCgCUGGCCCccgCCAGGCc -3'
miRNA:   3'- aagaUGGaGUGaGAUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 170402 0.69 0.774559
Target:  5'- ---gACCcCGCgCUGGCCCccgCCAGGCc -3'
miRNA:   3'- aagaUGGaGUGaGAUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 41624 0.69 0.755443
Target:  5'- aUCUaggaGCCUagaaaACUCggguGCCCcCCAGGCg -3'
miRNA:   3'- aAGA----UGGAg----UGAGau--CGGGaGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 74930 0.7 0.735884
Target:  5'- -gCUGgCUCACUg-GGuCCCUCCAGGg -3'
miRNA:   3'- aaGAUgGAGUGAgaUC-GGGAGGUCCg -5'
28979 5' -55.8 NC_006146.1 + 156715 0.7 0.695738
Target:  5'- aUCUcGCCUCccGCUC---CCCUCCGGGCc -3'
miRNA:   3'- aAGA-UGGAG--UGAGaucGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 85815 0.72 0.623734
Target:  5'- gUCUGCCUC--UCUGGCCCUuugccCCGGuGCc -3'
miRNA:   3'- aAGAUGGAGugAGAUCGGGA-----GGUC-CG- -5'
28979 5' -55.8 NC_006146.1 + 62506 0.72 0.603094
Target:  5'- cUCUgGCCUCGCUg-GGCUCUCcCAGGUa -3'
miRNA:   3'- aAGA-UGGAGUGAgaUCGGGAG-GUCCG- -5'
28979 5' -55.8 NC_006146.1 + 167607 0.69 0.774559
Target:  5'- ---gACCcCGCgCUGGCCCccgCCAGGCc -3'
miRNA:   3'- aagaUGGaGUGaGAUCGGGa--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 130583 0.69 0.783926
Target:  5'- cUCUGCCUCGgaggCUuGCUgUCCAGGUu -3'
miRNA:   3'- aAGAUGGAGUga--GAuCGGgAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 156493 0.68 0.802236
Target:  5'- cUCUACaUCAcCUCUGuGCCCUgCuGGCg -3'
miRNA:   3'- aAGAUGgAGU-GAGAU-CGGGAgGuCCG- -5'
28979 5' -55.8 NC_006146.1 + 147517 0.66 0.909425
Target:  5'- aUCUACCcCAg-CUGcGUCUUCCAGGUg -3'
miRNA:   3'- aAGAUGGaGUgaGAU-CGGGAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 127424 0.66 0.903194
Target:  5'- cUCgcaUUCGCUCcaGGCCCUCCgagaAGGCc -3'
miRNA:   3'- aAGaugGAGUGAGa-UCGGGAGG----UCCG- -5'
28979 5' -55.8 NC_006146.1 + 99274 0.66 0.902558
Target:  5'- ---gACCUgGCUgcgGGCCCUCCAccacuacGGCa -3'
miRNA:   3'- aagaUGGAgUGAga-UCGGGAGGU-------CCG- -5'
28979 5' -55.8 NC_006146.1 + 62583 0.66 0.896726
Target:  5'- cUCUuCCUCGCgagCUgaacggccaggGGCCuCUCCGGcGCg -3'
miRNA:   3'- aAGAuGGAGUGa--GA-----------UCGG-GAGGUC-CG- -5'
28979 5' -55.8 NC_006146.1 + 126432 0.66 0.896726
Target:  5'- cUC-ACCUCGC-CcGGCagugaCUCCGGGCc -3'
miRNA:   3'- aAGaUGGAGUGaGaUCGg----GAGGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 99511 0.66 0.889339
Target:  5'- ---gGCUUCcgcagcaGgUCUGGCCCUgaCCAGGCg -3'
miRNA:   3'- aagaUGGAG-------UgAGAUCGGGA--GGUCCG- -5'
28979 5' -55.8 NC_006146.1 + 100256 0.67 0.853131
Target:  5'- ---gGCCUCAUcuUCcAGCCCUCUucccGGCg -3'
miRNA:   3'- aagaUGGAGUG--AGaUCGGGAGGu---CCG- -5'
28979 5' -55.8 NC_006146.1 + 161473 0.68 0.828502
Target:  5'- cUUCgugACCUCGgUCU--CCC-CCAGGCg -3'
miRNA:   3'- -AAGa--UGGAGUgAGAucGGGaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.