Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2898 | 3' | -55.4 | NC_001493.1 | + | 60218 | 0.69 | 0.798062 |
Target: 5'- -cUCGcGGGCGCCGGuggcuuggucgacccUCGACACgUGu -3' miRNA: 3'- guAGCuCCCGCGGCU---------------AGUUGUGgACc -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 88891 | 0.69 | 0.79444 |
Target: 5'- aCAUCGAGcGGCuGUCGGUgagcgucgauuaCGGCGCaCUGGa -3' miRNA: 3'- -GUAGCUC-CCG-CGGCUA------------GUUGUG-GACC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 84678 | 0.69 | 0.775985 |
Target: 5'- aUAUCGcuuacuGGGCGCCcucaGAUCGGCgACgCUGGa -3' miRNA: 3'- -GUAGCu-----CCCGCGG----CUAGUUG-UG-GACC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 37290 | 0.7 | 0.707792 |
Target: 5'- aCAUCGAGGGUuCCGAggcUCAguGCACaUGGu -3' miRNA: 3'- -GUAGCUCCCGcGGCU---AGU--UGUGgACC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 37495 | 0.7 | 0.707792 |
Target: 5'- cCAUUGuuugguGGGCcUCGAUCGGCugCUGGu -3' miRNA: 3'- -GUAGCu-----CCCGcGGCUAGUUGugGACC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 87939 | 0.71 | 0.697716 |
Target: 5'- uUAUCGAGGucaugGCUcacggGAUCGGCGCCUGGa -3' miRNA: 3'- -GUAGCUCCcg---CGG-----CUAGUUGUGGACC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 25344 | 0.71 | 0.68657 |
Target: 5'- uGUCGGGuGuGCGuUCGAUCGgucuccuGCACCUGGa -3' miRNA: 3'- gUAGCUC-C-CGC-GGCUAGU-------UGUGGACC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 125356 | 0.71 | 0.677409 |
Target: 5'- gGUCagGAGcGCGCCGAUCAuCACCaGGa -3' miRNA: 3'- gUAG--CUCcCGCGGCUAGUuGUGGaCC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 9802 | 0.71 | 0.677409 |
Target: 5'- gGUCagGAGcGCGCCGAUCAuCACCaGGa -3' miRNA: 3'- gUAG--CUCcCGCGGCUAGUuGUGGaCC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 50948 | 0.71 | 0.656952 |
Target: 5'- --gUGGGGGUGCCgGGUCAugAUCUGa -3' miRNA: 3'- guaGCUCCCGCGG-CUAGUugUGGACc -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 14995 | 0.72 | 0.615864 |
Target: 5'- -cUCGGGGGUG-CGAUCGAgGCCgcgGGu -3' miRNA: 3'- guAGCUCCCGCgGCUAGUUgUGGa--CC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 68449 | 0.72 | 0.615864 |
Target: 5'- gGUCGAGgagcacGGCGCCGAguu-CAUCUGGa -3' miRNA: 3'- gUAGCUC------CCGCGGCUaguuGUGGACC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 130550 | 0.72 | 0.615864 |
Target: 5'- -cUCGGGGGUG-CGAUCGAgGCCgcgGGu -3' miRNA: 3'- guAGCUCCCGCgGCUAGUUgUGGa--CC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 112517 | 0.74 | 0.534723 |
Target: 5'- --aCGGGGGCGCCGAaUCAGUACCg-- -3' miRNA: 3'- guaGCUCCCGCGGCU-AGUUGUGGacc -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 30255 | 0.74 | 0.524811 |
Target: 5'- cCAUCGuGGGCGaCGAUCGugagcaACACCgagGGg -3' miRNA: 3'- -GUAGCuCCCGCgGCUAGU------UGUGGa--CC- -5' |
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2898 | 3' | -55.4 | NC_001493.1 | + | 23457 | 0.98 | 0.017942 |
Target: 5'- gCAUCGA-GGCGCCGAUCAACACCUGGa -3' miRNA: 3'- -GUAGCUcCCGCGGCUAGUUGUGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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