Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2898 | 5' | -56 | NC_001493.1 | + | 23424 | 1.1 | 0.002288 |
Target: 5'- gCCCCAGGGAGAGAUUCGAUGCCCUCAc -3' miRNA: 3'- -GGGGUCCCUCUCUAAGCUACGGGAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 5500 | 0.72 | 0.595361 |
Target: 5'- -aCCAGGGAGAGuuuccgucaCGGUGCCCa-- -3' miRNA: 3'- ggGGUCCCUCUCuaa------GCUACGGGagu -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 121055 | 0.71 | 0.634359 |
Target: 5'- -aCCAGGGAGAGuuuccggucaCGGUGCCCa-- -3' miRNA: 3'- ggGGUCCCUCUCuaa-------GCUACGGGagu -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 54861 | 0.7 | 0.667195 |
Target: 5'- gCCCCGGGGAGcGAguggugCGAgccGCCCcggUCAg -3' miRNA: 3'- -GGGGUCCCUCuCUaa----GCUa--CGGG---AGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 102154 | 0.7 | 0.697716 |
Target: 5'- aCCCgAGGGGGAGccUUCGGUGCgaccCCUUc -3' miRNA: 3'- -GGGgUCCCUCUCu-AAGCUACG----GGAGu -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 15541 | 0.69 | 0.737591 |
Target: 5'- gCCCC--GGAGGGucUCGAUGCgCUCAc -3' miRNA: 3'- -GGGGucCCUCUCuaAGCUACGgGAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 131095 | 0.69 | 0.737591 |
Target: 5'- gCCCC--GGAGGGucUCGAUGCgCUCAc -3' miRNA: 3'- -GGGGucCCUCUCuaAGCUACGgGAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 87793 | 0.69 | 0.75701 |
Target: 5'- gCCCCGGGGGGcAGGUccCGGgguagauccgGUCCUCGu -3' miRNA: 3'- -GGGGUCCCUC-UCUAa-GCUa---------CGGGAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 121673 | 0.69 | 0.75701 |
Target: 5'- -aCC-GGGAGAGAccacaUCGAgaagGCCCUCu -3' miRNA: 3'- ggGGuCCCUCUCUa----AGCUa---CGGGAGu -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 6119 | 0.69 | 0.75701 |
Target: 5'- -aCC-GGGAGAGAccacaUCGAgaagGCCCUCu -3' miRNA: 3'- ggGGuCCCUCUCUa----AGCUa---CGGGAGu -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 25455 | 0.68 | 0.812304 |
Target: 5'- uCUCCGGGGGGAucaaccgcgugcGAUccUCGucGCCCUCGg -3' miRNA: 3'- -GGGGUCCCUCU------------CUA--AGCuaCGGGAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 46872 | 0.67 | 0.837844 |
Target: 5'- gCUCCAGGaAGAGAUUCGcca-CCUCGg -3' miRNA: 3'- -GGGGUCCcUCUCUAAGCuacgGGAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 89405 | 0.67 | 0.837844 |
Target: 5'- aUCCGGGGGGAGAagugucUCGG-GCCCg-- -3' miRNA: 3'- gGGGUCCCUCUCUa-----AGCUaCGGGagu -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 57036 | 0.67 | 0.845991 |
Target: 5'- aCCUGGGGGcuguacuguacGAGA-UCaGUGCCCUCGa -3' miRNA: 3'- gGGGUCCCU-----------CUCUaAGcUACGGGAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 84586 | 0.67 | 0.845991 |
Target: 5'- uCCCCgAGGGGGGcuuccUCGAUGUCgUCGa -3' miRNA: 3'- -GGGG-UCCCUCUcua--AGCUACGGgAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 47257 | 0.66 | 0.869228 |
Target: 5'- aCCaUCAGGGcGGGGUUCGAcGCCaUCGu -3' miRNA: 3'- -GG-GGUCCCuCUCUAAGCUaCGGgAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 94987 | 0.66 | 0.876553 |
Target: 5'- gCCCCGuGGccuAGAGAUagGAUGUUCUCGc -3' miRNA: 3'- -GGGGUcCC---UCUCUAagCUACGGGAGU- -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 64314 | 0.66 | 0.876553 |
Target: 5'- cCCaCCAaGGcGAGGUUCGAUGCCa--- -3' miRNA: 3'- -GG-GGUcCCuCUCUAAGCUACGGgagu -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 56253 | 0.66 | 0.883657 |
Target: 5'- aCCCCGGucucacauuuaGGaAGAcGGUUCGG-GCCCUCc -3' miRNA: 3'- -GGGGUC-----------CC-UCU-CUAAGCUaCGGGAGu -5' |
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2898 | 5' | -56 | NC_001493.1 | + | 123385 | 0.66 | 0.890536 |
Target: 5'- uCCCCGGGGGGAGGguuaaUCGGggagGUCaccgggagaCUCGa -3' miRNA: 3'- -GGGGUCCCUCUCUa----AGCUa---CGG---------GAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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