Results 21 - 40 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28980 | 3' | -60.1 | NC_006146.1 | + | 136800 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 136429 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 136986 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 136057 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 136243 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 136615 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 135686 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 137172 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 136893 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 137079 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 135964 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 136150 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 135593 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 135500 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 135314 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 135778 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 137451 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 137265 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 136522 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28980 | 3' | -60.1 | NC_006146.1 | + | 135128 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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