Results 1 - 20 of 281 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28980 | 5' | -58 | NC_006146.1 | + | 115949 | 0.66 | 0.863632 |
Target: 5'- -cGGGAccCCCAAuGUc-AGCCGCCGGg -3' miRNA: 3'- uuCCCUcuGGGUU-CGcuUCGGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 98985 | 0.66 | 0.863632 |
Target: 5'- cAGGucAGGCCCAGGUcaGAGGCCGCgCGc -3' miRNA: 3'- uUCCc-UCUGGGUUCG--CUUCGGUG-GCc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 93708 | 0.66 | 0.863632 |
Target: 5'- --aGGAGGCCgugGAGaCGAGGCuCAUCGGa -3' miRNA: 3'- uucCCUCUGGg--UUC-GCUUCG-GUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 146898 | 0.66 | 0.863632 |
Target: 5'- gGAGGGcuGGGCCU--GCGAGGUUcuguugggGCCGGg -3' miRNA: 3'- -UUCCC--UCUGGGuuCGCUUCGG--------UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 84628 | 0.66 | 0.863632 |
Target: 5'- uGAGGGGGcaGCCUggGCuuugaGggGCaGCUGGg -3' miRNA: 3'- -UUCCCUC--UGGGuuCG-----CuuCGgUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 132929 | 0.66 | 0.856098 |
Target: 5'- --cGGAGaACCgGGGCuacuGggGaCCACCGGg -3' miRNA: 3'- uucCCUC-UGGgUUCG----CuuC-GGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 82082 | 0.66 | 0.856098 |
Target: 5'- cAGGGAGcCUCAGGCccAGCCACa-- -3' miRNA: 3'- uUCCCUCuGGGUUCGcuUCGGUGgcc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 33111 | 0.66 | 0.856098 |
Target: 5'- -cGGGuGGCCgCcGGCGGGuUCGCCGGg -3' miRNA: 3'- uuCCCuCUGG-GuUCGCUUcGGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 122098 | 0.66 | 0.856098 |
Target: 5'- -uGGGAGGCUgGGGCGuuGCCcaGCUuGGg -3' miRNA: 3'- uuCCCUCUGGgUUCGCuuCGG--UGG-CC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 49286 | 0.66 | 0.856098 |
Target: 5'- uGAGGGAGACggCCGcugcGGUGAAucuGCUcCCGGg -3' miRNA: 3'- -UUCCCUCUG--GGU----UCGCUU---CGGuGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 5037 | 0.66 | 0.84915 |
Target: 5'- cAGGGAGACCaCGuucuuugacaaguauGCGGggcuGGCCGuuGGa -3' miRNA: 3'- uUCCCUCUGG-GUu--------------CGCU----UCGGUggCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 168351 | 0.66 | 0.848368 |
Target: 5'- --cGGGGGCCagcGCGggGUC-CCGGg -3' miRNA: 3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 169283 | 0.66 | 0.848368 |
Target: 5'- --cGGGGGCCagcGCGggGUC-CCGGg -3' miRNA: 3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 99373 | 0.66 | 0.848368 |
Target: 5'- cGGGccgcgcguuGAGGCCCAggAGCGAgucGGCCagggggguGCCGGc -3' miRNA: 3'- uUCC---------CUCUGGGU--UCGCU---UCGG--------UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 167419 | 0.66 | 0.848368 |
Target: 5'- --cGGGGGCCagcGCGggGUC-CCGGg -3' miRNA: 3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 110259 | 0.66 | 0.848368 |
Target: 5'- uGAGGGuGcACUCGGG-GGAGCCAUCGc -3' miRNA: 3'- -UUCCCuC-UGGGUUCgCUUCGGUGGCc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 89305 | 0.66 | 0.848368 |
Target: 5'- -cGGGGGugCCAccUGggGCaguGCCGGu -3' miRNA: 3'- uuCCCUCugGGUucGCuuCGg--UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 9329 | 0.66 | 0.848368 |
Target: 5'- cGAGGGGGcGCCUggGCGggGgC-CUGa -3' miRNA: 3'- -UUCCCUC-UGGGuuCGCuuCgGuGGCc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 4562 | 0.66 | 0.848368 |
Target: 5'- uGGGGAG-CCC--GCGggGCCgugGCCa- -3' miRNA: 3'- uUCCCUCuGGGuuCGCuuCGG---UGGcc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 170214 | 0.66 | 0.848368 |
Target: 5'- --cGGGGGCCagcGCGggGUC-CCGGg -3' miRNA: 3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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