Results 21 - 40 of 281 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28980 | 5' | -58 | NC_006146.1 | + | 92717 | 0.66 | 0.846012 |
Target: 5'- cAGGGAGGuguccuccucguccUCUGAuaGGAGCCGCUGGg -3' miRNA: 3'- uUCCCUCU--------------GGGUUcgCUUCGGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 49524 | 0.66 | 0.846012 |
Target: 5'- -cGGGuGAUCCGggggcuccucugggGGCgGAGGCCacGCCGGc -3' miRNA: 3'- uuCCCuCUGGGU--------------UCG-CUUCGG--UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 66781 | 0.66 | 0.843639 |
Target: 5'- cGGGGugcgaccuggacaccGGGCCCAGGCGgcGCaugaGgCGGa -3' miRNA: 3'- uUCCC---------------UCUGGGUUCGCuuCGg---UgGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 10469 | 0.66 | 0.843639 |
Target: 5'- -cGGGAGaaaccuguggcaccuGCgCAAGCGAAGCCuuaGGg -3' miRNA: 3'- uuCCCUC---------------UGgGUUCGCUUCGGuggCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 89081 | 0.66 | 0.840449 |
Target: 5'- cGGGGGAGGuguucCUCGAcCGAuGCUACCGGc -3' miRNA: 3'- -UUCCCUCU-----GGGUUcGCUuCGGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 139396 | 0.66 | 0.840449 |
Target: 5'- -uGGGGGACCgcGGCu--GCCACCGc -3' miRNA: 3'- uuCCCUCUGGguUCGcuuCGGUGGCc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 109294 | 0.66 | 0.840449 |
Target: 5'- gGAGGGAucucGGCCCcGGcCGcGGCCGCUGc -3' miRNA: 3'- -UUCCCU----CUGGGuUC-GCuUCGGUGGCc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 139165 | 0.66 | 0.840449 |
Target: 5'- cGGGGGGGCgCCu-GUGAGGCgGCUGu -3' miRNA: 3'- uUCCCUCUG-GGuuCGCUUCGgUGGCc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 33403 | 0.66 | 0.837229 |
Target: 5'- gGGGGGuGGCCCGccugggcaccgcuGCGccGCCGCuCGGu -3' miRNA: 3'- -UUCCCuCUGGGUu------------CGCuuCGGUG-GCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 167567 | 0.66 | 0.832346 |
Target: 5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3' miRNA: 3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 170362 | 0.66 | 0.832346 |
Target: 5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3' miRNA: 3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 169431 | 0.66 | 0.832346 |
Target: 5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3' miRNA: 3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 170583 | 0.66 | 0.832346 |
Target: 5'- -cGGGAGAaugacagCUggGCGuggcGAGCgCGCCGGg -3' miRNA: 3'- uuCCCUCUg------GGuuCGC----UUCG-GUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 48220 | 0.66 | 0.832346 |
Target: 5'- gGAGGGccuGGcgcGCCUggGUGAGcGCCGCgCGGa -3' miRNA: 3'- -UUCCC---UC---UGGGuuCGCUU-CGGUG-GCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 168499 | 0.66 | 0.832346 |
Target: 5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3' miRNA: 3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 52095 | 0.66 | 0.832346 |
Target: 5'- --cGGGGGCC--GGCGAGGCCAUCu- -3' miRNA: 3'- uucCCUCUGGguUCGCUUCGGUGGcc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 118340 | 0.66 | 0.832346 |
Target: 5'- gGGGGGAGACCCuguuGGgGGAGUguUCa- -3' miRNA: 3'- -UUCCCUCUGGGu---UCgCUUCGguGGcc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 33877 | 0.66 | 0.832346 |
Target: 5'- cGGGGAGGaagCCGGGUGggGgCCuggggucCCGGg -3' miRNA: 3'- uUCCCUCUg--GGUUCGCuuC-GGu------GGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 111345 | 0.66 | 0.824067 |
Target: 5'- aGAGGGAGGaggCCAGccGCccGGCCACCuGGg -3' miRNA: 3'- -UUCCCUCUg--GGUU--CGcuUCGGUGG-CC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 75572 | 0.66 | 0.824067 |
Target: 5'- cGGGGAGAauuCCUGuaaUGAGGCCGCCGu -3' miRNA: 3'- uUCCCUCU---GGGUuc-GCUUCGGUGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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