Results 1 - 20 of 281 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28980 | 5' | -58 | NC_006146.1 | + | 3256 | 0.67 | 0.780296 |
Target: 5'- uAGGG-GACCUGgggacGGCGcAGGCCacgaGCCGGg -3' miRNA: 3'- uUCCCuCUGGGU-----UCGC-UUCGG----UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 3943 | 0.69 | 0.694159 |
Target: 5'- uAGGG-GACCCAccccgGGCuGAagGGCCACgCGGc -3' miRNA: 3'- uUCCCuCUGGGU-----UCG-CU--UCGGUG-GCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 4562 | 0.66 | 0.848368 |
Target: 5'- uGGGGAG-CCC--GCGggGCCgugGCCa- -3' miRNA: 3'- uUCCCUCuGGGuuCGCuuCGG---UGGcc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 5037 | 0.66 | 0.84915 |
Target: 5'- cAGGGAGACCaCGuucuuugacaaguauGCGGggcuGGCCGuuGGa -3' miRNA: 3'- uUCCCUCUGG-GUu--------------CGCU----UCGGUggCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 5800 | 0.7 | 0.634076 |
Target: 5'- --aGGAGugCCAGGUGGcGGCCGUCGGg -3' miRNA: 3'- uucCCUCugGGUUCGCU-UCGGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 9329 | 0.66 | 0.848368 |
Target: 5'- cGAGGGGGcGCCUggGCGggGgC-CUGa -3' miRNA: 3'- -UUCCCUC-UGGGuuCGCuuCgGuGGCc -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 10469 | 0.66 | 0.843639 |
Target: 5'- -cGGGAGaaaccuguggcaccuGCgCAAGCGAAGCCuuaGGg -3' miRNA: 3'- uuCCCUC---------------UGgGUUCGCUUCGGuggCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 12540 | 0.68 | 0.712895 |
Target: 5'- gGAGGGccugAGGCCCAggGGCGAggggacugaggcgGGCCugaagcCCGGg -3' miRNA: 3'- -UUCCC----UCUGGGU--UCGCU-------------UCGGu-----GGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 12752 | 0.69 | 0.664231 |
Target: 5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3' miRNA: 3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 12850 | 0.67 | 0.777558 |
Target: 5'- -cGaGGAGGCgCCuggGGCGAGGCUggguggcugggcagGCCGGg -3' miRNA: 3'- uuC-CCUCUG-GGu--UCGCUUCGG--------------UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 13389 | 0.73 | 0.477385 |
Target: 5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3' miRNA: 3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 13477 | 0.7 | 0.613952 |
Target: 5'- gGAGGcGGACCCGAGgGGcucugGGgCGCCGGu -3' miRNA: 3'- -UUCCcUCUGGGUUCgCU-----UCgGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 13771 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 13952 | 0.67 | 0.798248 |
Target: 5'- cAGGGGAGAgguaAGGCGGcucucccgGGCUGCCGGg -3' miRNA: 3'- -UUCCCUCUggg-UUCGCU--------UCGGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 14059 | 0.71 | 0.544288 |
Target: 5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3' miRNA: 3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 15000 | 1.07 | 0.002578 |
Target: 5'- uAGGGGAGACCCAAGCGAAGCCACCGGa -3' miRNA: 3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 15619 | 0.68 | 0.712895 |
Target: 5'- gGAGGGccugAGGCCCAggGGCGAggggacugaggcgGGCCugaagcCCGGg -3' miRNA: 3'- -UUCCC----UCUGGGU--UCGCU-------------UCGGu-----GGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 15831 | 0.69 | 0.664231 |
Target: 5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3' miRNA: 3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 15929 | 0.68 | 0.710933 |
Target: 5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGu -3' miRNA: 3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5' |
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28980 | 5' | -58 | NC_006146.1 | + | 16466 | 0.73 | 0.477385 |
Target: 5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3' miRNA: 3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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