Results 1 - 20 of 562 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 95470 | 0.65 | 0.647758 |
Target: 5'- gGGGGCuCUgAgAGCuCCGGGUCaaacucgggggagaAGGCCu -3' miRNA: 3'- gCUCCG-GAgUgUCG-GGUCCGG--------------UCCGG- -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 2765 | 0.65 | 0.647758 |
Target: 5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3' miRNA: 3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 98523 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCgcgCcCGGCCCcGuGCCAgacGGCCa -3' miRNA: 3'- gcUCCGGa--GuGUCGGGuC-CGGU---CCGG- -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 12505 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 15584 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 18662 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 21740 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 24818 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 27896 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 45141 | 0.66 | 0.621438 |
Target: 5'- cCGGGGCCUCcccGCGcCCCuGGCCacgagAGGUUc -3' miRNA: 3'- -GCUCCGGAG---UGUcGGGuCCGG-----UCCGG- -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 138186 | 0.66 | 0.630212 |
Target: 5'- gGGGGCg-CACcccccaccccgccGGCCCccgggAGGCCcGGCCg -3' miRNA: 3'- gCUCCGgaGUG-------------UCGGG-----UCCGGuCCGG- -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 93076 | 0.66 | 0.631188 |
Target: 5'- gGuGGCCUaGCAGguaCCUGGGCUcguGGCCg -3' miRNA: 3'- gCuCCGGAgUGUC---GGGUCCGGu--CCGG- -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 42883 | 0.66 | 0.640937 |
Target: 5'- gGGGGgCUCugcCAGCCuCAGGCagcccaccgCGGGCg -3' miRNA: 3'- gCUCCgGAGu--GUCGG-GUCCG---------GUCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 47389 | 0.66 | 0.640937 |
Target: 5'- aGGGGCCUgGC-GCUCGGGgC-GGCg -3' miRNA: 3'- gCUCCGGAgUGuCGGGUCCgGuCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 160891 | 0.66 | 0.631188 |
Target: 5'- aCGAGacggaccuGCCUCuacCGGCCCuGGUCAuGuGCCg -3' miRNA: 3'- -GCUC--------CGGAGu--GUCGGGuCCGGU-C-CGG- -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 39163 | 0.66 | 0.631188 |
Target: 5'- gCGAGaGUCUgGgGGCCCAcccggauGCCAaGGCCa -3' miRNA: 3'- -GCUC-CGGAgUgUCGGGUc------CGGU-CCGG- -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 162587 | 0.66 | 0.631188 |
Target: 5'- --uGGCC-CACcggGGuCCCGGGCgCGGGCg -3' miRNA: 3'- gcuCCGGaGUG---UC-GGGUCCG-GUCCGg -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 52058 | 0.66 | 0.631188 |
Target: 5'- ----uCUUCAUccccauccccgGGCUCGGGCCAGGCCc -3' miRNA: 3'- gcuccGGAGUG-----------UCGGGUCCGGUCCGG- -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 53220 | 0.66 | 0.631188 |
Target: 5'- gCGGcGGCCgcggC-CAGCCgCgugAGGCCcaGGGCCa -3' miRNA: 3'- -GCU-CCGGa---GuGUCGG-G---UCCGG--UCCGG- -5' |
|||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 121098 | 0.66 | 0.631188 |
Target: 5'- aGAGGCCgucggaggcgaUCcgguugauGCAGCCgGGGUCgAGGCg -3' miRNA: 3'- gCUCCGG-----------AG--------UGUCGGgUCCGG-UCCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home