miRNA display CGI


Results 1 - 20 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 3' -62.9 NC_006146.1 + 2615 0.7 0.378052
Target:  5'- --cGGCCUCAC-GUCCAcGGUCgggGGGCCg -3'
miRNA:   3'- gcuCCGGAGUGuCGGGU-CCGG---UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 2765 0.65 0.647758
Target:  5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3'
miRNA:   3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5'
28982 3' -62.9 NC_006146.1 + 3257 0.67 0.534773
Target:  5'- aGGGGaCCUggggACGGCgCAGGCCAcGaGCCg -3'
miRNA:   3'- gCUCC-GGAg---UGUCGgGUCCGGU-C-CGG- -5'
28982 3' -62.9 NC_006146.1 + 3742 0.69 0.426935
Target:  5'- gCGuGGCCcuuCAGCCCGGGgUGGGUCc -3'
miRNA:   3'- -GCuCCGGaguGUCGGGUCCgGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 3800 0.73 0.249497
Target:  5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3'
miRNA:   3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 3942 0.67 0.582581
Target:  5'- aGGGGaCC-CAC--CCCGGGCUgaaGGGCCa -3'
miRNA:   3'- gCUCC-GGaGUGucGGGUCCGG---UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 4087 0.68 0.470409
Target:  5'- gGGGGCCUCGuCGGU--GGGCCucGCCg -3'
miRNA:   3'- gCUCCGGAGU-GUCGggUCCGGucCGG- -5'
28982 3' -62.9 NC_006146.1 + 4351 0.69 0.441453
Target:  5'- gGAGGCCgagccgUACGucagcuucacGCCCAGGUCAcgcgcguagucgcuGGCCg -3'
miRNA:   3'- gCUCCGGa-----GUGU----------CGGGUCCGGU--------------CCGG- -5'
28982 3' -62.9 NC_006146.1 + 4365 0.7 0.385935
Target:  5'- aCGuGGCC--ACGGCCCcgcGGGCucccCAGGCCg -3'
miRNA:   3'- -GCuCCGGagUGUCGGG---UCCG----GUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 4567 0.68 0.506751
Target:  5'- --cGGCCUgGgGaGCCCgcgGGGCCGuGGCCa -3'
miRNA:   3'- gcuCCGGAgUgU-CGGG---UCCGGU-CCGG- -5'
28982 3' -62.9 NC_006146.1 + 5152 0.66 0.640937
Target:  5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3'
miRNA:   3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5'
28982 3' -62.9 NC_006146.1 + 5417 0.69 0.448381
Target:  5'- cCGAGGCCggcaaggaccugCACcccuagcucccccaGGCCCAGGgaaaacgucUCGGGCCu -3'
miRNA:   3'- -GCUCCGGa-----------GUG--------------UCGGGUCC---------GGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 9482 0.71 0.325971
Target:  5'- gCGGGGCCaCACccGCCU-GGCaCAGGCCu -3'
miRNA:   3'- -GCUCCGGaGUGu-CGGGuCCG-GUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 12308 0.68 0.479374
Target:  5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3'
miRNA:   3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 12459 0.67 0.534773
Target:  5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3'
miRNA:   3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 12505 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28982 3' -62.9 NC_006146.1 + 12611 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 12711 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28982 3' -62.9 NC_006146.1 + 12791 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 12830 0.7 0.370279
Target:  5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3'
miRNA:   3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.