Results 1 - 20 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28982 | 3' | -62.9 | NC_006146.1 | + | 2615 | 0.7 | 0.378052 |
Target: 5'- --cGGCCUCAC-GUCCAcGGUCgggGGGCCg -3' miRNA: 3'- gcuCCGGAGUGuCGGGU-CCGG---UCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 2765 | 0.65 | 0.647758 |
Target: 5'- uCGcAGGCC-CA-AGCCCGGaugucagggaagacGCCAGGCg -3' miRNA: 3'- -GC-UCCGGaGUgUCGGGUC--------------CGGUCCGg -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 3257 | 0.67 | 0.534773 |
Target: 5'- aGGGGaCCUggggACGGCgCAGGCCAcGaGCCg -3' miRNA: 3'- gCUCC-GGAg---UGUCGgGUCCGGU-C-CGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 3742 | 0.69 | 0.426935 |
Target: 5'- gCGuGGCCcuuCAGCCCGGGgUGGGUCc -3' miRNA: 3'- -GCuCCGGaguGUCGGGUCCgGUCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 3800 | 0.73 | 0.249497 |
Target: 5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3' miRNA: 3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 3942 | 0.67 | 0.582581 |
Target: 5'- aGGGGaCC-CAC--CCCGGGCUgaaGGGCCa -3' miRNA: 3'- gCUCC-GGaGUGucGGGUCCGG---UCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 4087 | 0.68 | 0.470409 |
Target: 5'- gGGGGCCUCGuCGGU--GGGCCucGCCg -3' miRNA: 3'- gCUCCGGAGU-GUCGggUCCGGucCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 4351 | 0.69 | 0.441453 |
Target: 5'- gGAGGCCgagccgUACGucagcuucacGCCCAGGUCAcgcgcguagucgcuGGCCg -3' miRNA: 3'- gCUCCGGa-----GUGU----------CGGGUCCGGU--------------CCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 4365 | 0.7 | 0.385935 |
Target: 5'- aCGuGGCC--ACGGCCCcgcGGGCucccCAGGCCg -3' miRNA: 3'- -GCuCCGGagUGUCGGG---UCCG----GUCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 4567 | 0.68 | 0.506751 |
Target: 5'- --cGGCCUgGgGaGCCCgcgGGGCCGuGGCCa -3' miRNA: 3'- gcuCCGGAgUgU-CGGG---UCCGGU-CCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 5152 | 0.66 | 0.640937 |
Target: 5'- gGAGGCuCUCGUGGCCCcugguccccgGGGCaCAgagcacGGCCa -3' miRNA: 3'- gCUCCG-GAGUGUCGGG----------UCCG-GU------CCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 5417 | 0.69 | 0.448381 |
Target: 5'- cCGAGGCCggcaaggaccugCACcccuagcucccccaGGCCCAGGgaaaacgucUCGGGCCu -3' miRNA: 3'- -GCUCCGGa-----------GUG--------------UCGGGUCC---------GGUCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 9482 | 0.71 | 0.325971 |
Target: 5'- gCGGGGCCaCACccGCCU-GGCaCAGGCCu -3' miRNA: 3'- -GCUCCGGaGUGu-CGGGuCCG-GUCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 12308 | 0.68 | 0.479374 |
Target: 5'- aGucGCCUCAa--CCCGGGCUucAGGCCc -3' miRNA: 3'- gCucCGGAGUgucGGGUCCGG--UCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 12459 | 0.67 | 0.534773 |
Target: 5'- cCGGGGCCUUucaGGCCC---UCGGGCCc -3' miRNA: 3'- -GCUCCGGAGug-UCGGGuccGGUCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 12505 | 0.66 | 0.621438 |
Target: 5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3' miRNA: 3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 12611 | 1.11 | 0.000537 |
Target: 5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3' miRNA: 3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 12711 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 12791 | 0.72 | 0.305339 |
Target: 5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3' miRNA: 3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' |
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28982 | 3' | -62.9 | NC_006146.1 | + | 12830 | 0.7 | 0.370279 |
Target: 5'- uGGGGCCUgGCcgGGUCUAagguGGCCuGGCCu -3' miRNA: 3'- gCUCCGGAgUG--UCGGGU----CCGGuCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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