miRNA display CGI


Results 21 - 40 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 3' -62.9 NC_006146.1 + 53220 0.66 0.631188
Target:  5'- gCGGcGGCCgcggC-CAGCCgCgugAGGCCcaGGGCCa -3'
miRNA:   3'- -GCU-CCGGa---GuGUCGG-G---UCCGG--UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 52058 0.66 0.631188
Target:  5'- ----uCUUCAUccccauccccgGGCUCGGGCCAGGCCc -3'
miRNA:   3'- gcuccGGAGUG-----------UCGGGUCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 162587 0.66 0.631188
Target:  5'- --uGGCC-CACcggGGuCCCGGGCgCGGGCg -3'
miRNA:   3'- gcuCCGGaGUG---UC-GGGUCCG-GUCCGg -5'
28982 3' -62.9 NC_006146.1 + 39163 0.66 0.631188
Target:  5'- gCGAGaGUCUgGgGGCCCAcccggauGCCAaGGCCa -3'
miRNA:   3'- -GCUC-CGGAgUgUCGGGUc------CGGU-CCGG- -5'
28982 3' -62.9 NC_006146.1 + 160891 0.66 0.631188
Target:  5'- aCGAGacggaccuGCCUCuacCGGCCCuGGUCAuGuGCCg -3'
miRNA:   3'- -GCUC--------CGGAGu--GUCGGGuCCGGU-C-CGG- -5'
28982 3' -62.9 NC_006146.1 + 69472 0.66 0.631188
Target:  5'- --cGGCUuaACcaggauGCCCugcauGGCCAGGCCc -3'
miRNA:   3'- gcuCCGGagUGu-----CGGGu----CCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 93076 0.66 0.631188
Target:  5'- gGuGGCCUaGCAGguaCCUGGGCUcguGGCCg -3'
miRNA:   3'- gCuCCGGAgUGUC---GGGUCCGGu--CCGG- -5'
28982 3' -62.9 NC_006146.1 + 138186 0.66 0.630212
Target:  5'- gGGGGCg-CACcccccaccccgccGGCCCccgggAGGCCcGGCCg -3'
miRNA:   3'- gCUCCGgaGUG-------------UCGGG-----UCCGGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 53867 0.66 0.630212
Target:  5'- gCGAcgcuGGCCcucagCGCccccguagggcguAGCCCAGGUCcaGGGCCc -3'
miRNA:   3'- -GCU----CCGGa----GUG-------------UCGGGUCCGG--UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 156356 0.66 0.630212
Target:  5'- aGcGGCCcaGCAGCuCCAGGgcccgguCCAGGCUc -3'
miRNA:   3'- gCuCCGGagUGUCG-GGUCC-------GGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 136136 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 15584 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28982 3' -62.9 NC_006146.1 + 12505 0.66 0.621438
Target:  5'- -cGGGCCUga-AGCCCGGGUUgAGGCg -3'
miRNA:   3'- gcUCCGGAgugUCGGGUCCGG-UCCGg -5'
28982 3' -62.9 NC_006146.1 + 135485 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 135578 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 135671 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 135764 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 135857 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 135950 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 136043 0.66 0.621438
Target:  5'- gCGGGGCa--GCGGaCCCAGGggcaCCcGGCCc -3'
miRNA:   3'- -GCUCCGgagUGUC-GGGUCC----GGuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.