miRNA display CGI


Results 21 - 40 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 3' -62.9 NC_006146.1 + 3800 0.73 0.249497
Target:  5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3'
miRNA:   3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 61933 0.74 0.21715
Target:  5'- cCGAGGCCuUCACgGGCCCggugaucaAGGCUcaggacacggGGGCCg -3'
miRNA:   3'- -GCUCCGG-AGUG-UCGGG--------UCCGG----------UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 129031 0.78 0.130918
Target:  5'- cCGGGGCacggCGCAGCCCGaGCUGGGCCc -3'
miRNA:   3'- -GCUCCGga--GUGUCGGGUcCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 21846 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 22945 0.73 0.261132
Target:  5'- --cGGCCUCuCGGUccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCG---GGUCCGGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 25023 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28982 3' -62.9 NC_006146.1 + 51976 0.77 0.148028
Target:  5'- gGAGGUCUC-CGGCaugCGGGCCGGGCg -3'
miRNA:   3'- gCUCCGGAGuGUCGg--GUCCGGUCCGg -5'
28982 3' -62.9 NC_006146.1 + 18768 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 18868 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28982 3' -62.9 NC_006146.1 + 15690 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 113673 0.76 0.159249
Target:  5'- aGAGGUggCUCG-GGCCCGGGCCcGGCCu -3'
miRNA:   3'- gCUCCG--GAGUgUCGGGUCCGGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 69862 0.73 0.249497
Target:  5'- gGAGGUCgggCGuagaGGCCCAGGuCCAcGGCCg -3'
miRNA:   3'- gCUCCGGa--GUg---UCGGGUCC-GGU-CCGG- -5'
28982 3' -62.9 NC_006146.1 + 78705 0.77 0.147667
Target:  5'- -cAGGCCgggCccgccccccagcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGa--G-------------UGUC-GGGUCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 155142 0.77 0.144451
Target:  5'- cCGcGGCgUCGCAGCagCGGGCCAgGGCCa -3'
miRNA:   3'- -GCuCCGgAGUGUCGg-GUCCGGU-CCGG- -5'
28982 3' -62.9 NC_006146.1 + 78830 0.79 0.097052
Target:  5'- -cGGGCCgccccccgcaGCAGcCCCAGGCCGGGCCc -3'
miRNA:   3'- gcUCCGGag--------UGUC-GGGUCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 28001 1.11 0.000537
Target:  5'- uCGAGGCCUCACAGCCCAGGCCAGGCCa -3'
miRNA:   3'- -GCUCCGGAGUGUCGGGUCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 43321 0.73 0.273205
Target:  5'- --cGGCCggCGCGGCCUcGGCCgcccaGGGCCa -3'
miRNA:   3'- gcuCCGGa-GUGUCGGGuCCGG-----UCCGG- -5'
28982 3' -62.9 NC_006146.1 + 158820 0.73 0.267114
Target:  5'- -cAGGCa-CACGGCCgGGGCCcGGCCc -3'
miRNA:   3'- gcUCCGgaGUGUCGGgUCCGGuCCGG- -5'
28982 3' -62.9 NC_006146.1 + 169432 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28982 3' -62.9 NC_006146.1 + 28101 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.