Results 81 - 100 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28982 | 5' | -53 | NC_006146.1 | + | 168856 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 169788 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 128298 | 0.66 | 0.982703 |
Target: 5'- cUCGGCCAGGUuggcgguCUCGcagAGCguguAGACCa -3' miRNA: 3'- -GGCCGGUCCG-------GGGUa--UUGauu-UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 4007 | 0.66 | 0.980867 |
Target: 5'- cCCcGCCuGGCcugaCCCAgaccUGACUGuGGGCCa -3' miRNA: 3'- -GGcCGGuCCG----GGGU----AUUGAUuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 48543 | 0.66 | 0.980867 |
Target: 5'- gCCGGCCcgcuGGCCa---GACUGGAcGCCu -3' miRNA: 3'- -GGCCGGu---CCGGgguaUUGAUUUcUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 163402 | 0.66 | 0.980867 |
Target: 5'- aCGGCCugcccGGCUCCu---CUGAGGGgCa -3' miRNA: 3'- gGCCGGu----CCGGGGuauuGAUUUCUgG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 96899 | 0.66 | 0.980867 |
Target: 5'- uCUGGUCcgugAGGCacuugaCCAccguGCUGGAGACCu -3' miRNA: 3'- -GGCCGG----UCCGg-----GGUau--UGAUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 99398 | 0.66 | 0.982899 |
Target: 5'- -aGGCCGcGGCCUCc---CUGGAGGCg -3' miRNA: 3'- ggCCGGU-CCGGGGuauuGAUUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 46967 | 0.66 | 0.982899 |
Target: 5'- gCCGGCCAGccauccGCCCgGggucgggaGGC-GAGGACCc -3' miRNA: 3'- -GGCCGGUC------CGGGgUa-------UUGaUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 41082 | 0.66 | 0.982899 |
Target: 5'- gUCGuCCGGuGCUCCGUGAUgu-AGGCCc -3' miRNA: 3'- -GGCcGGUC-CGGGGUAUUGauuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 41540 | 0.66 | 0.984764 |
Target: 5'- aCC-GCCAGGCCCU--------GGGCCa -3' miRNA: 3'- -GGcCGGUCCGGGGuauugauuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 109486 | 0.66 | 0.984764 |
Target: 5'- gCGGCCGGGgccgagaucccUCCCA--GCUAc-GACCu -3' miRNA: 3'- gGCCGGUCC-----------GGGGUauUGAUuuCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 13400 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 16477 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 19555 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 22633 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 25711 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 28789 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 85697 | 0.66 | 0.982899 |
Target: 5'- aCCGGCguGGaggauCCCG--ACgagGAGACCa -3' miRNA: 3'- -GGCCGguCCg----GGGUauUGau-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 120604 | 0.66 | 0.982899 |
Target: 5'- aUGGCCAGGuuggcccccaCCCCGUcGgUGAAGAa- -3' miRNA: 3'- gGCCGGUCC----------GGGGUAuUgAUUUCUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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