Results 101 - 120 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28982 | 5' | -53 | NC_006146.1 | + | 110367 | 0.66 | 0.978659 |
Target: 5'- aCCGGCgCugAGGCCCUG-GAC-AGAGAUCc -3' miRNA: 3'- -GGCCG-G--UCCGGGGUaUUGaUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 55245 | 0.66 | 0.978659 |
Target: 5'- aCGGCCgccuguggcAGGCCCCG--GCccc-GACCc -3' miRNA: 3'- gGCCGG---------UCCGGGGUauUGauuuCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 164439 | 0.66 | 0.978659 |
Target: 5'- gUGGCCcaccAGGCCCCAcugaugguggUAACaau-GGCCc -3' miRNA: 3'- gGCCGG----UCCGGGGU----------AUUGauuuCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 12919 | 0.66 | 0.978659 |
Target: 5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3' miRNA: 3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 15998 | 0.66 | 0.978659 |
Target: 5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3' miRNA: 3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 4007 | 0.66 | 0.980867 |
Target: 5'- cCCcGCCuGGCcugaCCCAgaccUGACUGuGGGCCa -3' miRNA: 3'- -GGcCGGuCCG----GGGU----AUUGAUuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 128298 | 0.66 | 0.982703 |
Target: 5'- cUCGGCCAGGUuggcgguCUCGcagAGCguguAGACCa -3' miRNA: 3'- -GGCCGGUCCG-------GGGUa--UUGauu-UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 22633 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 25711 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 28789 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 85697 | 0.66 | 0.982899 |
Target: 5'- aCCGGCguGGaggauCCCG--ACgagGAGACCa -3' miRNA: 3'- -GGCCGguCCg----GGGUauUGau-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 120604 | 0.66 | 0.982899 |
Target: 5'- aUGGCCAGGuuggcccccaCCCCGUcGgUGAAGAa- -3' miRNA: 3'- gGCCGGUCC----------GGGGUAuUgAUUUCUgg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 41082 | 0.66 | 0.982899 |
Target: 5'- gUCGuCCGGuGCUCCGUGAUgu-AGGCCc -3' miRNA: 3'- -GGCcGGUC-CGGGGUAUUGauuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 46967 | 0.66 | 0.982899 |
Target: 5'- gCCGGCCAGccauccGCCCgGggucgggaGGC-GAGGACCc -3' miRNA: 3'- -GGCCGGUC------CGGGgUa-------UUGaUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 99398 | 0.66 | 0.982899 |
Target: 5'- -aGGCCGcGGCCUCc---CUGGAGGCg -3' miRNA: 3'- ggCCGGU-CCGGGGuauuGAUUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 126747 | 0.66 | 0.982899 |
Target: 5'- uCCGuGaCCgcGGGCCCCGggGGC-AGAGACa -3' miRNA: 3'- -GGC-C-GG--UCCGGGGUa-UUGaUUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 140602 | 0.66 | 0.982899 |
Target: 5'- uCCuGCCaacGGGCCCCAacacagagcUGACauccUGGAGAUCu -3' miRNA: 3'- -GGcCGG---UCCGGGGU---------AUUG----AUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 167924 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 168856 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 169788 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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