miRNA display CGI


Results 121 - 140 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 19555 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 104784 0.67 0.973686
Target:  5'- cCCGuaCCAuacacGGCCCCGUAGCUcccccGGCCc -3'
miRNA:   3'- -GGCc-GGU-----CCGGGGUAUUGAuuu--CUGG- -5'
28982 5' -53 NC_006146.1 + 17173 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 55067 0.67 0.967923
Target:  5'- gCGGCCGuaucGGaCCCAcAGC-AGGGACCu -3'
miRNA:   3'- gGCCGGU----CCgGGGUaUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 29485 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 26407 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 16641 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 19719 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 22797 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 25875 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 28952 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 45532 0.67 0.970907
Target:  5'- -gGGCCuGGGCCuCCuugGGCUu--GGCCg -3'
miRNA:   3'- ggCCGG-UCCGG-GGua-UUGAuuuCUGG- -5'
28982 5' -53 NC_006146.1 + 2757 0.67 0.973686
Target:  5'- cCCGGCCcucgcAGGCCCaagcccgGAUgucaggGAAGACg -3'
miRNA:   3'- -GGCCGG-----UCCGGGgua----UUGa-----UUUCUGg -5'
28982 5' -53 NC_006146.1 + 44242 0.67 0.970618
Target:  5'- uCUGGCCGGGCggcggugUCCAUugcccCUGcGGGCCc -3'
miRNA:   3'- -GGCCGGUCCG-------GGGUAuu---GAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 128069 0.67 0.973686
Target:  5'- gCGGCCcucgAGGCCCUGauccUGGuCUAcacgcucugcGAGACCg -3'
miRNA:   3'- gGCCGG----UCCGGGGU----AUU-GAU----------UUCUGG- -5'
28982 5' -53 NC_006146.1 + 128192 0.67 0.973686
Target:  5'- gCGGCCcagggGGGCgCCGcGGCgccGGGCCa -3'
miRNA:   3'- gGCCGG-----UCCGgGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 14095 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 60891 0.67 0.967923
Target:  5'- aCCGGCCuGGGgCCCAgugGAUccAGGAgCu -3'
miRNA:   3'- -GGCCGG-UCCgGGGUa--UUGauUUCUgG- -5'
28982 5' -53 NC_006146.1 + 20251 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 23329 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.