miRNA display CGI


Results 141 - 160 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 19328 0.67 0.960964
Target:  5'- cCCgGGCCuAGGCcgacucucugacuCCCAgAGCUAccccAAGGCCa -3'
miRNA:   3'- -GG-CCGG-UCCG-------------GGGUaUUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 28561 0.67 0.960964
Target:  5'- cCCgGGCCuAGGCcgacucucugacuCCCAgAGCUAccccAAGGCCa -3'
miRNA:   3'- -GG-CCGG-UCCG-------------GGGUaUUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 25875 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 23329 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 26407 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 34140 0.67 0.974742
Target:  5'- gCGGCCGGGCCUCccggAGCcccggcgaggguggGGGGugCg -3'
miRNA:   3'- gGCCGGUCCGGGGua--UUGa-------------UUUCugG- -5'
28982 5' -53 NC_006146.1 + 46641 0.67 0.961317
Target:  5'- uCCGGCCuacGCCgCCGccuucCUGGGGGCCc -3'
miRNA:   3'- -GGCCGGuc-CGG-GGUauu--GAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 42032 0.67 0.961317
Target:  5'- cCUGGCCAcGGCCCgg-GugUuuucacagaaaGGGGACCg -3'
miRNA:   3'- -GGCCGGU-CCGGGguaUugA-----------UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 2881 0.67 0.964728
Target:  5'- -aGGCCAGGgugcugccgUCUCAUAaacaGCUGAGGGCa -3'
miRNA:   3'- ggCCGGUCC---------GGGGUAU----UGAUUUCUGg -5'
28982 5' -53 NC_006146.1 + 29485 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 99334 0.67 0.967923
Target:  5'- gCCGGUCgcuGGaGCCCCuguggaGACgccuGAGGCCg -3'
miRNA:   3'- -GGCCGG---UC-CGGGGua----UUGau--UUCUGG- -5'
28982 5' -53 NC_006146.1 + 12537 0.67 0.966671
Target:  5'- -gGGCCugAGGCCCaggggcgagggGACUGAggcGGGCCu -3'
miRNA:   3'- ggCCGG--UCCGGGgua--------UUGAUU---UCUGG- -5'
28982 5' -53 NC_006146.1 + 15616 0.67 0.966671
Target:  5'- -gGGCCugAGGCCCaggggcgagggGACUGAggcGGGCCu -3'
miRNA:   3'- ggCCGG--UCCGGGgua--------UUGAUU---UCUGG- -5'
28982 5' -53 NC_006146.1 + 13563 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 18694 0.67 0.966671
Target:  5'- -gGGCCugAGGCCCaggggcgagggGACUGAggcGGGCCu -3'
miRNA:   3'- ggCCGG--UCCGGGgua--------UUGAUU---UCUGG- -5'
28982 5' -53 NC_006146.1 + 21772 0.67 0.966671
Target:  5'- -gGGCCugAGGCCCaggggcgagggGACUGAggcGGGCCu -3'
miRNA:   3'- ggCCGG--UCCGGGgua--------UUGAUU---UCUGG- -5'
28982 5' -53 NC_006146.1 + 27928 0.67 0.966671
Target:  5'- -gGGCCugAGGCCCaggggcgagggGACUGAggcGGGCCu -3'
miRNA:   3'- ggCCGG--UCCGGGgua--------UUGAUU---UCUGG- -5'
28982 5' -53 NC_006146.1 + 25483 0.67 0.960964
Target:  5'- cCCgGGCCuAGGCcgacucucugacuCCCAgAGCUAccccAAGGCCa -3'
miRNA:   3'- -GG-CCGG-UCCG-------------GGGUaUUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 157200 0.67 0.964728
Target:  5'- aCGGCCgAGGCCgCgCGUGACUuuuuGGAa- -3'
miRNA:   3'- gGCCGG-UCCGG-G-GUAUUGAuu--UCUgg -5'
28982 5' -53 NC_006146.1 + 113870 0.67 0.964728
Target:  5'- -aGGCCGGGCCCg--GGCccGAG-CCa -3'
miRNA:   3'- ggCCGGUCCGGGguaUUGauUUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.