miRNA display CGI


Results 81 - 100 of 590 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 132943 0.74 0.699023
Target:  5'- gCGGCauccGGCCCCGgagaaccggggcuACUGGGGACCa -3'
miRNA:   3'- gGCCGgu--CCGGGGUau-----------UGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 55676 0.74 0.694972
Target:  5'- gCGGCCGGGCCUCGUucucGCccgcGGCCa -3'
miRNA:   3'- gGCCGGUCCGGGGUAu---UGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 93604 0.74 0.705081
Target:  5'- aCCcGCCGGGCUCCuggGGCUGcuguccuccccgGAGGCCg -3'
miRNA:   3'- -GGcCGGUCCGGGGua-UUGAU------------UUCUGG- -5'
28982 5' -53 NC_006146.1 + 56129 0.74 0.715128
Target:  5'- gUGGCCgcGGGCCCCGaGACcgAGAGcACCu -3'
miRNA:   3'- gGCCGG--UCCGGGGUaUUGa-UUUC-UGG- -5'
28982 5' -53 NC_006146.1 + 40678 0.74 0.725103
Target:  5'- aCGGCCuGGCCaCCAcc-CUGAGGugCu -3'
miRNA:   3'- gGCCGGuCCGG-GGUauuGAUUUCugG- -5'
28982 5' -53 NC_006146.1 + 46615 0.74 0.715128
Target:  5'- gUCGGCCAGGUcuUCCAUcagGGCcuUGGGGGCCg -3'
miRNA:   3'- -GGCCGGUCCG--GGGUA---UUG--AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 151928 0.74 0.715128
Target:  5'- uCCGGCCcuGCCgCCcucuCUAGGGGCCg -3'
miRNA:   3'- -GGCCGGucCGG-GGuauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 46821 0.74 0.705081
Target:  5'- cUCGGCCcccaAGGCCCU--GAUgGAAGACCu -3'
miRNA:   3'- -GGCCGG----UCCGGGGuaUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 168758 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 34237 0.73 0.734012
Target:  5'- cCCGGCCggcauAGGCCCCG-------GGACCa -3'
miRNA:   3'- -GGCCGG-----UCCGGGGUauugauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 170621 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 11868 0.73 0.773576
Target:  5'- -gGGCCuacuuGGCCgCAUGGC-GAGGACCc -3'
miRNA:   3'- ggCCGGu----CCGGgGUAUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 156284 0.73 0.758357
Target:  5'- gCCGGCCGGGCCggaggagggcacgguCUcgGGCccGGGGCCg -3'
miRNA:   3'- -GGCCGGUCCGG---------------GGuaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 169690 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 55731 0.73 0.773576
Target:  5'- gCCGGCguGGCggCGgAGCUGGAGGCCc -3'
miRNA:   3'- -GGCCGguCCGggGUaUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 60283 0.73 0.744802
Target:  5'- aCCGGCCcGGCgauugCCCGUAGCUccacGGGACg -3'
miRNA:   3'- -GGCCGGuCCG-----GGGUAUUGAu---UUCUGg -5'
28982 5' -53 NC_006146.1 + 34079 0.73 0.744802
Target:  5'- -aGGCCGGGCacaCCCcgGGgaGGAGGCCg -3'
miRNA:   3'- ggCCGGUCCG---GGGuaUUgaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 167826 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 45196 0.73 0.744802
Target:  5'- aCGGUgGGGCCUCAccgAGCUGGAGAg- -3'
miRNA:   3'- gGCCGgUCCGGGGUa--UUGAUUUCUgg -5'
28982 5' -53 NC_006146.1 + 137784 0.73 0.7641
Target:  5'- cCCGGCCcccGGCCCg--AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGguaUUGAu-UUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.