miRNA display CGI


Results 121 - 140 of 590 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 146828 0.72 0.792136
Target:  5'- aUGGacCCAGGCCUCGUGACccu-GGCCg -3'
miRNA:   3'- gGCC--GGUCCGGGGUAUUGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 105275 0.72 0.801201
Target:  5'- gCUGcGCCAGGCgCUcgAGCccuuUGAGGACCa -3'
miRNA:   3'- -GGC-CGGUCCGgGGuaUUG----AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 144770 0.72 0.801201
Target:  5'- uCCGaCCGGGCCCCGgugcCUuuccauGGACCa -3'
miRNA:   3'- -GGCcGGUCCGGGGUauu-GAuu----UCUGG- -5'
28982 5' -53 NC_006146.1 + 5113 0.72 0.810111
Target:  5'- gCCGGCCGuGCCaCCGUGGCUcugAuuGAUCg -3'
miRNA:   3'- -GGCCGGUcCGG-GGUAUUGA---UuuCUGG- -5'
28982 5' -53 NC_006146.1 + 65715 0.72 0.827433
Target:  5'- cCCGGCUccccGGCCCCGgucACUGGacGGugCg -3'
miRNA:   3'- -GGCCGGu---CCGGGGUau-UGAUU--UCugG- -5'
28982 5' -53 NC_006146.1 + 129031 0.72 0.801201
Target:  5'- cCUGGCCGGGCUuaCCu--GCUccuGGACCg -3'
miRNA:   3'- -GGCCGGUCCGG--GGuauUGAuu-UCUGG- -5'
28982 5' -53 NC_006146.1 + 53112 0.71 0.852049
Target:  5'- -aGGCCAGcGCCCCcg----GGGGGCCa -3'
miRNA:   3'- ggCCGGUC-CGGGGuauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 33285 0.71 0.867464
Target:  5'- cCCGGCU--GCCCCAgAGCcgcAGGGCCg -3'
miRNA:   3'- -GGCCGGucCGGGGUaUUGau-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 57332 0.71 0.867464
Target:  5'- gCGGUCGGcaccaGCCCCccgaAAUUAGGGACCa -3'
miRNA:   3'- gGCCGGUC-----CGGGGua--UUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 2758 0.71 0.859861
Target:  5'- aCGuCCAGaGCCUCAgugGGCUGAAGAaCCa -3'
miRNA:   3'- gGCcGGUC-CGGGGUa--UUGAUUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 49070 0.71 0.835828
Target:  5'- -aGGCgCAGGCCUgGcgcCUGGAGGCCg -3'
miRNA:   3'- ggCCG-GUCCGGGgUauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 43693 0.71 0.852049
Target:  5'- -gGGCUGGGCCCCGccGCcGGAG-CCg -3'
miRNA:   3'- ggCCGGUCCGGGGUauUGaUUUCuGG- -5'
28982 5' -53 NC_006146.1 + 147036 0.71 0.835828
Target:  5'- cCCGaGCCAGGCCCgGgcucuacGCUGGcgcGGCCu -3'
miRNA:   3'- -GGC-CGGUCCGGGgUau-----UGAUUu--CUGG- -5'
28982 5' -53 NC_006146.1 + 109758 0.71 0.839135
Target:  5'- gCCGGCgAGGCaccuucaccagcgugCCCGUGuACUgcgaggaggGAGGACCg -3'
miRNA:   3'- -GGCCGgUCCG---------------GGGUAU-UGA---------UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 113694 0.71 0.84241
Target:  5'- gCGGCCAuGGCCCCcuccuggaUGAAGAgCg -3'
miRNA:   3'- gGCCGGU-CCGGGGuauug---AUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 150976 0.71 0.844036
Target:  5'- gUGGCCcGGCaCCU---GCUGGGGGCCa -3'
miRNA:   3'- gGCCGGuCCG-GGGuauUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 95720 0.71 0.844036
Target:  5'- cCUGGCCAGGCgCCGcacccGACagcucccggauaUGGAGGCCu -3'
miRNA:   3'- -GGCCGGUCCGgGGUa----UUG------------AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 58214 0.71 0.844036
Target:  5'- -aGGCCGGGCUCU---GCgcGAAGGCCg -3'
miRNA:   3'- ggCCGGUCCGGGGuauUGa-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 101101 0.71 0.852049
Target:  5'- aCGGUCGGGgaCCCCAcGGCc-GAGACCc -3'
miRNA:   3'- gGCCGGUCC--GGGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 137913 0.71 0.867464
Target:  5'- aCCGGgUAGGCCCgGgcACccccggggGGAGGCCg -3'
miRNA:   3'- -GGCCgGUCCGGGgUauUGa-------UUUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.