Results 81 - 100 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28982 | 5' | -53 | NC_006146.1 | + | 53514 | 0.74 | 0.694972 |
Target: 5'- uCUGGCUgcGGGCCgCGcGugUGAAGGCCg -3' miRNA: 3'- -GGCCGG--UCCGGgGUaUugAUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 132943 | 0.74 | 0.699023 |
Target: 5'- gCGGCauccGGCCCCGgagaaccggggcuACUGGGGACCa -3' miRNA: 3'- gGCCGgu--CCGGGGUau-----------UGAUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 93604 | 0.74 | 0.705081 |
Target: 5'- aCCcGCCGGGCUCCuggGGCUGcuguccuccccgGAGGCCg -3' miRNA: 3'- -GGcCGGUCCGGGGua-UUGAU------------UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 46821 | 0.74 | 0.705081 |
Target: 5'- cUCGGCCcccaAGGCCCU--GAUgGAAGACCu -3' miRNA: 3'- -GGCCGG----UCCGGGGuaUUGaUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 46615 | 0.74 | 0.715128 |
Target: 5'- gUCGGCCAGGUcuUCCAUcagGGCcuUGGGGGCCg -3' miRNA: 3'- -GGCCGGUCCG--GGGUA---UUG--AUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 56129 | 0.74 | 0.715128 |
Target: 5'- gUGGCCgcGGGCCCCGaGACcgAGAGcACCu -3' miRNA: 3'- gGCCGG--UCCGGGGUaUUGa-UUUC-UGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 151928 | 0.74 | 0.715128 |
Target: 5'- uCCGGCCcuGCCgCCcucuCUAGGGGCCg -3' miRNA: 3'- -GGCCGGucCGG-GGuauuGAUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 40678 | 0.74 | 0.725103 |
Target: 5'- aCGGCCuGGCCaCCAcc-CUGAGGugCu -3' miRNA: 3'- gGCCGGuCCGG-GGUauuGAUUUCugG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 34237 | 0.73 | 0.734012 |
Target: 5'- cCCGGCCggcauAGGCCCCG-------GGACCa -3' miRNA: 3'- -GGCCGG-----UCCGGGGUauugauuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 73431 | 0.73 | 0.734998 |
Target: 5'- -aGGCCGGGCCCCuUGGCaccgGAuGACa -3' miRNA: 3'- ggCCGGUCCGGGGuAUUGa---UUuCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137889 | 0.73 | 0.734998 |
Target: 5'- gCCGGCaggGGGuCCCCGUGGac-AGGGCCg -3' miRNA: 3'- -GGCCGg--UCC-GGGGUAUUgauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 147445 | 0.73 | 0.734998 |
Target: 5'- aCGGCCAgGGCCUCGUAGgccGAGACg -3' miRNA: 3'- gGCCGGU-CCGGGGUAUUgauUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 45196 | 0.73 | 0.744802 |
Target: 5'- aCGGUgGGGCCUCAccgAGCUGGAGAg- -3' miRNA: 3'- gGCCGgUCCGGGGUa--UUGAUUUCUgg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 34079 | 0.73 | 0.744802 |
Target: 5'- -aGGCCGGGCacaCCCcgGGgaGGAGGCCg -3' miRNA: 3'- ggCCGGUCCG---GGGuaUUgaUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 60283 | 0.73 | 0.744802 |
Target: 5'- aCCGGCCcGGCgauugCCCGUAGCUccacGGGACg -3' miRNA: 3'- -GGCCGGuCCG-----GGGUAUUGAu---UUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 39255 | 0.73 | 0.748696 |
Target: 5'- cUCGGCCcugaggaacggguguGGGCCCCG-GACUcGAGACg -3' miRNA: 3'- -GGCCGG---------------UCCGGGGUaUUGAuUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 47674 | 0.73 | 0.754506 |
Target: 5'- gCGGCCAgGGUCUCGUGGaugGAGGACUu -3' miRNA: 3'- gGCCGGU-CCGGGGUAUUga-UUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 98520 | 0.73 | 0.754506 |
Target: 5'- gCCGcGCCcGGCCCCGUGcCaGAcGGCCa -3' miRNA: 3'- -GGC-CGGuCCGGGGUAUuGaUUuCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 97560 | 0.73 | 0.754506 |
Target: 5'- aUGGCCAGGCUCCGgAGCUccccGGGCg -3' miRNA: 3'- gGCCGGUCCGGGGUaUUGAuu--UCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 156284 | 0.73 | 0.758357 |
Target: 5'- gCCGGCCGGGCCggaggagggcacgguCUcgGGCccGGGGCCg -3' miRNA: 3'- -GGCCGGUCCGG---------------GGuaUUGauUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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