miRNA display CGI


Results 101 - 120 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 128851 0.73 0.7641
Target:  5'- cCCGGCCAGGCa-CAgg---AAGGGCCa -3'
miRNA:   3'- -GGCCGGUCCGggGUauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 137784 0.73 0.7641
Target:  5'- cCCGGCCcccGGCCCg--AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGguaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 55731 0.73 0.773576
Target:  5'- gCCGGCguGGCggCGgAGCUGGAGGCCc -3'
miRNA:   3'- -GGCCGguCCGggGUaUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 11868 0.73 0.773576
Target:  5'- -gGGCCuacuuGGCCgCAUGGC-GAGGACCc -3'
miRNA:   3'- ggCCGGu----CCGGgGUAUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 46714 0.73 0.773576
Target:  5'- gUCGGCCGcggcGGCUCCGaGGCgggcGGAGGCCa -3'
miRNA:   3'- -GGCCGGU----CCGGGGUaUUGa---UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 94635 0.73 0.782924
Target:  5'- -gGGCCGGGUCCaugAUGGCcgcccUGGGGACCa -3'
miRNA:   3'- ggCCGGUCCGGGg--UAUUG-----AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 167826 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 168758 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 169690 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 170621 0.73 0.782924
Target:  5'- aCGcGCCGGGCCCC---GCg--GGACCc -3'
miRNA:   3'- gGC-CGGUCCGGGGuauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 43319 0.73 0.782924
Target:  5'- cCCGGCCGgcgcGGCCUCGgccGCccAGGGCCa -3'
miRNA:   3'- -GGCCGGU----CCGGGGUau-UGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 146828 0.72 0.792136
Target:  5'- aUGGacCCAGGCCUCGUGACccu-GGCCg -3'
miRNA:   3'- gGCC--GGUCCGGGGUAUUGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 113969 0.72 0.801201
Target:  5'- gUGGCCAGGCggggaCCCAaauUAaauagugacGCUAAAGACUg -3'
miRNA:   3'- gGCCGGUCCG-----GGGU---AU---------UGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 129031 0.72 0.801201
Target:  5'- cCUGGCCGGGCUuaCCu--GCUccuGGACCg -3'
miRNA:   3'- -GGCCGGUCCGG--GGuauUGAuu-UCUGG- -5'
28982 5' -53 NC_006146.1 + 144770 0.72 0.801201
Target:  5'- uCCGaCCGGGCCCCGgugcCUuuccauGGACCa -3'
miRNA:   3'- -GGCcGGUCCGGGGUauu-GAuu----UCUGG- -5'
28982 5' -53 NC_006146.1 + 105275 0.72 0.801201
Target:  5'- gCUGcGCCAGGCgCUcgAGCccuuUGAGGACCa -3'
miRNA:   3'- -GGC-CGGUCCGgGGuaUUG----AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 56736 0.72 0.801201
Target:  5'- -gGGCCuGGCCCgCGUGacgcgucagcuGCUGAuGGCCg -3'
miRNA:   3'- ggCCGGuCCGGG-GUAU-----------UGAUUuCUGG- -5'
28982 5' -53 NC_006146.1 + 137971 0.72 0.810111
Target:  5'- gCGGaCCAGGCCCacccgGACc--GGACCa -3'
miRNA:   3'- gGCC-GGUCCGGGgua--UUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 5113 0.72 0.810111
Target:  5'- gCCGGCCGuGCCaCCGUGGCUcugAuuGAUCg -3'
miRNA:   3'- -GGCCGGUcCGG-GGUAUUGA---UuuCUGG- -5'
28982 5' -53 NC_006146.1 + 48708 0.72 0.818858
Target:  5'- gCGGCCAGGaaCgCGgagguGCUGGAGACCc -3'
miRNA:   3'- gGCCGGUCCggG-GUau---UGAUUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.