miRNA display CGI


Results 121 - 140 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 48708 0.72 0.818858
Target:  5'- gCGGCCAGGaaCgCGgagguGCUGGAGACCc -3'
miRNA:   3'- gGCCGGUCCggG-GUau---UGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 69590 0.72 0.827433
Target:  5'- aUGGCCAGGUCCUggGGCagcGAGACg -3'
miRNA:   3'- gGCCGGUCCGGGGuaUUGau-UUCUGg -5'
28982 5' -53 NC_006146.1 + 65715 0.72 0.827433
Target:  5'- cCCGGCUccccGGCCCCGgucACUGGacGGugCg -3'
miRNA:   3'- -GGCCGGu---CCGGGGUau-UGAUU--UCugG- -5'
28982 5' -53 NC_006146.1 + 64881 0.72 0.827433
Target:  5'- gCGGCCAcGGCCagCAUgGACUGAAGAa- -3'
miRNA:   3'- gGCCGGU-CCGGg-GUA-UUGAUUUCUgg -5'
28982 5' -53 NC_006146.1 + 52100 0.72 0.827433
Target:  5'- gCCGGCgAGGCcaucuguucCCCGUcGCUGGAcACCa -3'
miRNA:   3'- -GGCCGgUCCG---------GGGUAuUGAUUUcUGG- -5'
28982 5' -53 NC_006146.1 + 53302 0.72 0.827433
Target:  5'- cCCgGGCCGGGCCgCCuccgGACU--AGACg -3'
miRNA:   3'- -GG-CCGGUCCGG-GGua--UUGAuuUCUGg -5'
28982 5' -53 NC_006146.1 + 49070 0.71 0.835828
Target:  5'- -aGGCgCAGGCCUgGcgcCUGGAGGCCg -3'
miRNA:   3'- ggCCG-GUCCGGGgUauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 47528 0.71 0.835828
Target:  5'- aCGGCgccuGGCCC---GGCUGGAGGCCa -3'
miRNA:   3'- gGCCGgu--CCGGGguaUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 147036 0.71 0.835828
Target:  5'- cCCGaGCCAGGCCCgGgcucuacGCUGGcgcGGCCu -3'
miRNA:   3'- -GGC-CGGUCCGGGgUau-----UGAUUu--CUGG- -5'
28982 5' -53 NC_006146.1 + 110106 0.71 0.835828
Target:  5'- uCCGGaCCAGGCCCU--------GGACCu -3'
miRNA:   3'- -GGCC-GGUCCGGGGuauugauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 44944 0.71 0.835828
Target:  5'- gUGGCCaggggcgcggggAGGCCCCGgggGACUc--GACCg -3'
miRNA:   3'- gGCCGG------------UCCGGGGUa--UUGAuuuCUGG- -5'
28982 5' -53 NC_006146.1 + 109758 0.71 0.839135
Target:  5'- gCCGGCgAGGCaccuucaccagcgugCCCGUGuACUgcgaggaggGAGGACCg -3'
miRNA:   3'- -GGCCGgUCCG---------------GGGUAU-UGA---------UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 113694 0.71 0.84241
Target:  5'- gCGGCCAuGGCCCCcuccuggaUGAAGAgCg -3'
miRNA:   3'- gGCCGGU-CCGGGGuauug---AUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 95194 0.71 0.843224
Target:  5'- uUGGCCAGGUCCCugcGCUGcagcuccuccaggGAGGCg -3'
miRNA:   3'- gGCCGGUCCGGGGuauUGAU-------------UUCUGg -5'
28982 5' -53 NC_006146.1 + 137971 0.71 0.844036
Target:  5'- gCGGCCGGGCCUCcc----GGGGGCCc -3'
miRNA:   3'- gGCCGGUCCGGGGuauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 95720 0.71 0.844036
Target:  5'- cCUGGCCAGGCgCCGcacccGACagcucccggauaUGGAGGCCu -3'
miRNA:   3'- -GGCCGGUCCGgGGUa----UUG------------AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 58214 0.71 0.844036
Target:  5'- -aGGCCGGGCUCU---GCgcGAAGGCCg -3'
miRNA:   3'- ggCCGGUCCGGGGuauUGa-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 150976 0.71 0.844036
Target:  5'- gUGGCCcGGCaCCU---GCUGGGGGCCa -3'
miRNA:   3'- gGCCGGuCCG-GGGuauUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 159008 0.71 0.851257
Target:  5'- aCCGcguaguuGCCGGGCCCCGUuggugccagucAACgucGGGCCc -3'
miRNA:   3'- -GGC-------CGGUCCGGGGUA-----------UUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 43693 0.71 0.852049
Target:  5'- -gGGCUGGGCCCCGccGCcGGAG-CCg -3'
miRNA:   3'- ggCCGGUCCGGGGUauUGaUUUCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.