miRNA display CGI


Results 141 - 160 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 53112 0.71 0.852049
Target:  5'- -aGGCCAGcGCCCCcg----GGGGGCCa -3'
miRNA:   3'- ggCCGGUC-CGGGGuauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 43693 0.71 0.852049
Target:  5'- -gGGCUGGGCCCCGccGCcGGAG-CCg -3'
miRNA:   3'- ggCCGGUCCGGGGUauUGaUUUCuGG- -5'
28982 5' -53 NC_006146.1 + 169956 0.71 0.852049
Target:  5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 109176 0.71 0.852049
Target:  5'- cCCGGCCcuuagucugAGGCCCa--GACaGAGGGCUg -3'
miRNA:   3'- -GGCCGG---------UCCGGGguaUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 110493 0.71 0.852049
Target:  5'- cCCGGCCAGGUCCagg----AGGGugCa -3'
miRNA:   3'- -GGCCGGUCCGGGguauugaUUUCugG- -5'
28982 5' -53 NC_006146.1 + 167160 0.71 0.852049
Target:  5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 169024 0.71 0.852049
Target:  5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 168092 0.71 0.852049
Target:  5'- aCUGuGCCAGGgCCUucggGACgGGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCgGGGua--UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 76782 0.71 0.852049
Target:  5'- aCgGGCCAGaacGCCCCcacacGGCUAucagGAGGCCg -3'
miRNA:   3'- -GgCCGGUC---CGGGGua---UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 54623 0.71 0.858315
Target:  5'- uCCGGCCGccucucuGGUCCgGUGGCUccccgggcauuggAGGGGCCc -3'
miRNA:   3'- -GGCCGGU-------CCGGGgUAUUGA-------------UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 2758 0.71 0.859861
Target:  5'- aCGuCCAGaGCCUCAgugGGCUGAAGAaCCa -3'
miRNA:   3'- gGCcGGUC-CGGGGUa--UUGAUUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 53976 0.71 0.859861
Target:  5'- gCgGGCCgAGGCCCuCGUccGGC--GAGACCu -3'
miRNA:   3'- -GgCCGG-UCCGGG-GUA--UUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 91949 0.71 0.859861
Target:  5'- -aGGCCAGGaCCCCuaccACgGAGGACa -3'
miRNA:   3'- ggCCGGUCC-GGGGuau-UGaUUUCUGg -5'
28982 5' -53 NC_006146.1 + 146688 0.71 0.859861
Target:  5'- gCGGCCccGGCCCCA--AC---AGACCu -3'
miRNA:   3'- gGCCGGu-CCGGGGUauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 154982 0.71 0.866713
Target:  5'- aCGGCCucgcgcaGGGCCCgGcacagaaguugcUGGCUcGAGGCCa -3'
miRNA:   3'- gGCCGG-------UCCGGGgU------------AUUGAuUUCUGG- -5'
28982 5' -53 NC_006146.1 + 137913 0.71 0.867464
Target:  5'- aCCGGgUAGGCCCgGgcACccccggggGGAGGCCg -3'
miRNA:   3'- -GGCCgGUCCGGGgUauUGa-------UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 57332 0.71 0.867464
Target:  5'- gCGGUCGGcaccaGCCCCccgaAAUUAGGGACCa -3'
miRNA:   3'- gGCCGGUC-----CGGGGua--UUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 89108 0.71 0.867464
Target:  5'- aCCGGCacuGCCCCAggUGGCacccccGGAGACCg -3'
miRNA:   3'- -GGCCGgucCGGGGU--AUUGa-----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 33285 0.71 0.867464
Target:  5'- cCCGGCU--GCCCCAgAGCcgcAGGGCCg -3'
miRNA:   3'- -GGCCGGucCGGGGUaUUGau-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 3890 0.71 0.867464
Target:  5'- cUCGGCgAGGCCCaccGAC--GAGGCCc -3'
miRNA:   3'- -GGCCGgUCCGGGguaUUGauUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.