miRNA display CGI


Results 101 - 120 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 110367 0.66 0.978659
Target:  5'- aCCGGCgCugAGGCCCUG-GAC-AGAGAUCc -3'
miRNA:   3'- -GGCCG-G--UCCGGGGUaUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 22154 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 34262 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28982 5' -53 NC_006146.1 + 42867 0.66 0.978659
Target:  5'- aCGGUCAGGCagcuCCuguauuUAACUuugcGGGCCg -3'
miRNA:   3'- gGCCGGUCCGg---GGu-----AUUGAuu--UCUGG- -5'
28982 5' -53 NC_006146.1 + 117874 0.66 0.978659
Target:  5'- gCGGCUgagauGGGCaCCCGaGGCUGGucaucGACCc -3'
miRNA:   3'- gGCCGG-----UCCG-GGGUaUUGAUUu----CUGG- -5'
28982 5' -53 NC_006146.1 + 2293 0.66 0.978659
Target:  5'- aCCGgaGCCAGGCCCUccuuccGACaguuccAGGCCa -3'
miRNA:   3'- -GGC--CGGUCCGGGGua----UUGauu---UCUGG- -5'
28982 5' -53 NC_006146.1 + 15998 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 28310 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 12919 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 102202 0.66 0.978659
Target:  5'- gCCGGgagacagcCCAGaGCCCC-UAGCaAGGGAgCCa -3'
miRNA:   3'- -GGCC--------GGUC-CGGGGuAUUGaUUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 67799 0.66 0.977961
Target:  5'- gCGGCCAGGCUCUgccccgccucggaaGUAaacaGCUccguGAGGugCg -3'
miRNA:   3'- gGCCGGUCCGGGG--------------UAU----UGA----UUUCugG- -5'
28982 5' -53 NC_006146.1 + 158827 0.66 0.977247
Target:  5'- aCGGCCGGGgCCCGgcccucgcaaagcgAGCacauGGGGCUg -3'
miRNA:   3'- gGCCGGUCCgGGGUa-------------UUGau--UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135699 0.66 0.977247
Target:  5'- gUGGCCGGGCCgcugCCGgguccGCUGcccguccuggagcucGGGGCCg -3'
miRNA:   3'- gGCCGGUCCGG----GGUau---UGAU---------------UUCUGG- -5'
28982 5' -53 NC_006146.1 + 1684 0.66 0.976268
Target:  5'- -aGGCC-GGCUgCCAUGGuCaGGAGGCCa -3'
miRNA:   3'- ggCCGGuCCGG-GGUAUU-GaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 50915 0.66 0.976268
Target:  5'- cCCGaCCGGGCCCUcgu-CUAu-GACCc -3'
miRNA:   3'- -GGCcGGUCCGGGGuauuGAUuuCUGG- -5'
28982 5' -53 NC_006146.1 + 3920 0.66 0.976268
Target:  5'- -gGGCCAcgcGGCCCCc-----AGAGACCc -3'
miRNA:   3'- ggCCGGU---CCGGGGuauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 46592 0.66 0.976268
Target:  5'- cUCGGCCuggucucGGCCCUGgcgaggGAC-GGGGGCCu -3'
miRNA:   3'- -GGCCGGu------CCGGGGUa-----UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 10650 0.66 0.976268
Target:  5'- cCCGGCCAGGgCUguU-ACUGAAaAUCa -3'
miRNA:   3'- -GGCCGGUCCgGGguAuUGAUUUcUGG- -5'
28982 5' -53 NC_006146.1 + 84531 0.66 0.976268
Target:  5'- gCCGGUaCAGGCgCCGUGGCaggugguuGGGCa -3'
miRNA:   3'- -GGCCG-GUCCGgGGUAUUGauu-----UCUGg -5'
28982 5' -53 NC_006146.1 + 75883 0.66 0.976268
Target:  5'- gUCGG-CGGGCuCCCGUAAUUccAGcACCu -3'
miRNA:   3'- -GGCCgGUCCG-GGGUAUUGAuuUC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.