miRNA display CGI


Results 121 - 140 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 50915 0.66 0.976268
Target:  5'- cCCGaCCGGGCCCUcgu-CUAu-GACCc -3'
miRNA:   3'- -GGCcGGUCCGGGGuauuGAUuuCUGG- -5'
28982 5' -53 NC_006146.1 + 34140 0.67 0.974742
Target:  5'- gCGGCCGGGCCUCccggAGCcccggcgaggguggGGGGugCg -3'
miRNA:   3'- gGCCGGUCCGGGGua--UUGa-------------UUUCugG- -5'
28982 5' -53 NC_006146.1 + 170719 0.67 0.973686
Target:  5'- gCCGcGCCcccucAGGCCCCGcccgccgcgcGCUGGGGGuCCg -3'
miRNA:   3'- -GGC-CGG-----UCCGGGGUau--------UGAUUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 17173 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 2757 0.67 0.973686
Target:  5'- cCCGGCCcucgcAGGCCCaagcccgGAUgucaggGAAGACg -3'
miRNA:   3'- -GGCCGG-----UCCGGGgua----UUGa-----UUUCUGg -5'
28982 5' -53 NC_006146.1 + 153496 0.67 0.973686
Target:  5'- cCUGGcCCGGGCCUgGUGcCUGGAG-Ca -3'
miRNA:   3'- -GGCC-GGUCCGGGgUAUuGAUUUCuGg -5'
28982 5' -53 NC_006146.1 + 69438 0.67 0.973686
Target:  5'- cCCGGaCCuGGCCCUGgggggaaacgGGCUAcGGGCg -3'
miRNA:   3'- -GGCC-GGuCCGGGGUa---------UUGAUuUCUGg -5'
28982 5' -53 NC_006146.1 + 76204 0.67 0.973686
Target:  5'- aCCuGCCuaaAGGCaCCCAUcuGgUAAGGGCCc -3'
miRNA:   3'- -GGcCGG---UCCG-GGGUAu-UgAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 133610 0.67 0.973686
Target:  5'- aCCGGCacUAGGUUCCAccGAagguuaUAGAGACCc -3'
miRNA:   3'- -GGCCG--GUCCGGGGUa-UUg-----AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 128069 0.67 0.973686
Target:  5'- gCGGCCcucgAGGCCCUGauccUGGuCUAcacgcucugcGAGACCg -3'
miRNA:   3'- gGCCGG----UCCGGGGU----AUU-GAU----------UUCUGG- -5'
28982 5' -53 NC_006146.1 + 41846 0.67 0.973686
Target:  5'- cCCgGGCCGuGGCCagg-GGCUAccGGGGCCu -3'
miRNA:   3'- -GG-CCGGU-CCGGgguaUUGAU--UUCUGG- -5'
28982 5' -53 NC_006146.1 + 128192 0.67 0.973686
Target:  5'- gCGGCCcagggGGGCgCCGcGGCgccGGGCCa -3'
miRNA:   3'- gGCCGG-----UCCGgGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 20251 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 14095 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 29485 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 23329 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 104784 0.67 0.973686
Target:  5'- cCCGuaCCAuacacGGCCCCGUAGCUcccccGGCCc -3'
miRNA:   3'- -GGCc-GGU-----CCGGGGUAUUGAuuu--CUGG- -5'
28982 5' -53 NC_006146.1 + 26407 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 108250 0.67 0.972874
Target:  5'- gUGGCCAGGCCggagguucucuucaCCAguccguCcAGGGGCCa -3'
miRNA:   3'- gGCCGGUCCGG--------------GGUauu---GaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 45532 0.67 0.970907
Target:  5'- -gGGCCuGGGCCuCCuugGGCUu--GGCCg -3'
miRNA:   3'- ggCCGG-UCCGG-GGua-UUGAuuuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.