miRNA display CGI


Results 61 - 80 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 16988 0.76 0.602651
Target:  5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3'
miRNA:   3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 17098 0.7 0.882022
Target:  5'- gCCGGCCugauGGaCCCgGUGgggagacaaGCUGAgggGGGCCg -3'
miRNA:   3'- -GGCCGGu---CC-GGGgUAU---------UGAUU---UCUGG- -5'
28982 5' -53 NC_006146.1 + 17132 0.69 0.931
Target:  5'- -aGGCCAGGCCCUccgucCUcccuGGCCa -3'
miRNA:   3'- ggCCGGUCCGGGGuauu-GAuuu-CUGG- -5'
28982 5' -53 NC_006146.1 + 17173 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 18109 0.67 0.967923
Target:  5'- uCCaGGcCCGGGCCCCcagguCUc-GGGCCa -3'
miRNA:   3'- -GG-CC-GGUCCGGGGuauu-GAuuUCUGG- -5'
28982 5' -53 NC_006146.1 + 18153 0.69 0.936044
Target:  5'- -aGGCCugGGGCCUCGgagGGCcugGAGGGCUa -3'
miRNA:   3'- ggCCGG--UCCGGGGUa--UUGa--UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 18694 0.67 0.966671
Target:  5'- -gGGCCugAGGCCCaggggcgagggGACUGAggcGGGCCu -3'
miRNA:   3'- ggCCGG--UCCGGGgua--------UUGAUU---UCUGG- -5'
28982 5' -53 NC_006146.1 + 18738 0.66 0.98647
Target:  5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3'
miRNA:   3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5'
28982 5' -53 NC_006146.1 + 18760 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 18803 1.13 0.00351
Target:  5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3'
miRNA:   3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 18803 0.68 0.945408
Target:  5'- -gGGCCugaaAGGCCCCGgcgcCUGGcucauguguccAGACCg -3'
miRNA:   3'- ggCCGG----UCCGGGGUauu-GAUU-----------UCUGG- -5'
28982 5' -53 NC_006146.1 + 18966 0.69 0.920189
Target:  5'- gUGGCCuGGCCUg--GGCUGuGAGGCCu -3'
miRNA:   3'- gGCCGGuCCGGGguaUUGAU-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 19019 0.68 0.953824
Target:  5'- -gGGCgAGGCUggGUGGCUGGgcAGGCCg -3'
miRNA:   3'- ggCCGgUCCGGggUAUUGAUU--UCUGG- -5'
28982 5' -53 NC_006146.1 + 19076 0.66 0.978659
Target:  5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3'
miRNA:   3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 19141 0.68 0.953824
Target:  5'- gUCGGCCuAGGCCCgGgGAgUGGAGGg- -3'
miRNA:   3'- -GGCCGG-UCCGGGgUaUUgAUUUCUgg -5'
28982 5' -53 NC_006146.1 + 19328 0.67 0.960964
Target:  5'- cCCgGGCCuAGGCcgacucucugacuCCCAgAGCUAccccAAGGCCa -3'
miRNA:   3'- -GG-CCGG-UCCG-------------GGGUaUUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 19537 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 19555 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 19614 0.68 0.940845
Target:  5'- cCCGGCagcccggguGGCCCCA------GAGGCCa -3'
miRNA:   3'- -GGCCGgu-------CCGGGGUauugauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 19719 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.